Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   WDV80_RS06570 Genome accession   NZ_CP147733
Coordinates   1306593..1306847 (-) Length   84 a.a.
NCBI ID   WP_237648209.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301593..1311847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS06550 (WDV80_06550) - 1302643..1304421 (-) 1779 WP_001220907.1 acyltransferase family protein -
  WDV80_RS06555 (WDV80_06555) - 1304418..1304798 (-) 381 WP_000787702.1 membrane protein -
  WDV80_RS06560 (WDV80_06560) - 1304805..1305242 (-) 438 WP_000754818.1 low molecular weight protein-tyrosine-phosphatase -
  WDV80_RS06565 (WDV80_06565) ruvB 1305394..1306392 (-) 999 WP_000196633.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WDV80_RS06570 (WDV80_06570) comR 1306593..1306847 (-) 255 WP_237648209.1 hypothetical protein Regulator
  WDV80_RS06575 (WDV80_06575) - 1306886..1307691 (+) 806 WP_088181596.1 IS5-like element IS1381A family transposase -
  WDV80_RS06580 (WDV80_06580) comR 1307688..1308362 (-) 675 WP_237648211.1 XRE family transcriptional regulator Regulator
  WDV80_RS06585 (WDV80_06585) purB 1308515..1309813 (-) 1299 WP_000572890.1 adenylosuccinate lyase -
  WDV80_RS06590 (WDV80_06590) - 1309835..1311226 (-) 1392 WP_001079797.1 hypothetical protein -

Sequence

Protein


Download         Length: 84 a.a.        Molecular weight: 10309.87 Da        Isoelectric Point: 4.6151

>NTDB_id=863004 WDV80_RS06570 WP_237648209.1 1306593..1306847(-) (comR) [Streptococcus agalactiae strain SagR272_TC]
MFILAEYQQIENIINTLNDILIKTQDFQKRPIIDMFEWKYQLFYKENREVAKRKYQESTLFAQLIGDQVLVTQLKEEWKA
DYIE

Nucleotide


Download         Length: 255 bp        

>NTDB_id=863004 WDV80_RS06570 WP_237648209.1 1306593..1306847(-) (comR) [Streptococcus agalactiae strain SagR272_TC]
TTGTTTATATTAGCTGAATATCAGCAAATAGAAAATATAATAAATACTCTAAATGATATTTTAATAAAAACTCAGGATTT
TCAAAAGAGGCCAATAATAGATATGTTCGAATGGAAATATCAGTTGTTTTATAAAGAAAATAGGGAAGTGGCTAAAAGAA
AGTATCAGGAATCAACTCTTTTTGCTCAATTAATTGGCGATCAAGTTTTAGTTACACAGCTAAAAGAGGAATGGAAAGCA
GACTATATAGAATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(3-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

43.056

85.714

0.369