Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   Q7651_RS02690 Genome accession   NZ_CP131622
Coordinates   521112..522074 (+) Length   320 a.a.
NCBI ID   WP_341944760.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020N07-265     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 516112..527074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7651_RS02665 (Q7651_02675) - 516616..517125 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7651_RS02670 (Q7651_02680) - 517355..517936 (-) 582 WP_003698180.1 superoxide dismutase -
  Q7651_RS02675 (Q7651_02685) dnaB 518099..519505 (+) 1407 WP_047918976.1 replicative DNA helicase -
  Q7651_RS02680 (Q7651_02690) pilH 519813..520475 (+) 663 WP_048339589.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7651_RS02685 (Q7651_02695) pilV 520507..521115 (+) 609 WP_341948102.1 type IV pilus modification protein PilV Machinery gene
  Q7651_RS02690 (Q7651_02700) pilJ 521112..522074 (+) 963 WP_341944760.1 PilW family protein Machinery gene
  Q7651_RS02695 (Q7651_02705) pilK 522053..522664 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  Q7651_RS02700 (Q7651_02710) pilL 522666..523139 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7651_RS02705 (Q7651_02715) - 523209..523517 (-) 309 WP_025456241.1 AzlD family protein -
  Q7651_RS02710 (Q7651_02720) - 523514..524223 (-) 710 Protein_524 AzlC family ABC transporter permease -
  Q7651_RS02715 (Q7651_02725) dut 524389..524841 (+) 453 WP_003687923.1 dUTP diphosphatase -
  Q7651_RS02720 (Q7651_02730) dapC 524919..526106 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  Q7651_RS02725 (Q7651_02735) yaaA 526262..527041 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 320 a.a.        Molecular weight: 35280.25 Da        Isoelectric Point: 9.6548

>NTDB_id=862883 Q7651_RS02690 WP_341944760.1 521112..522074(+) (pilJ) [Neisseria gonorrhoeae strain 2020N07-265]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSGVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESPNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAVISKPGKQILNLEDVKKELKIASQHKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 963 bp        

>NTDB_id=862883 Q7651_RS02690 WP_341944760.1 521112..522074(+) (pilJ) [Neisseria gonorrhoeae strain 2020N07-265]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGGTGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTCCAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGTGCCGATACTACCGTC
GTCAGCAGCTGTGCCGTAATATCGAAACCGGGCAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGC
GAGTCAGCATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCGGTAGTGATGCCAAGATTGCCG
CTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTT
TGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

86.562

100

0.866