Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Q5709_RS13585 Genome accession   NZ_CP131483
Coordinates   2853128..2855308 (-) Length   726 a.a.
NCBI ID   WP_005018050.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2848128..2860308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS13570 (Q5709_13575) - 2850565..2851428 (-) 864 WP_005018070.1 hypothetical protein -
  Q5709_RS13575 (Q5709_13580) aroB 2851436..2852521 (-) 1086 WP_005018054.1 3-dehydroquinate synthase -
  Q5709_RS13580 (Q5709_13585) aroK 2852540..2853091 (-) 552 WP_005018052.1 shikimate kinase AroK -
  Q5709_RS13585 (Q5709_13590) pilQ 2853128..2855308 (-) 2181 WP_005018050.1 type IV pilus secretin PilQ Machinery gene
  Q5709_RS13590 (Q5709_13595) pilP 2855326..2855853 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  Q5709_RS13595 (Q5709_13600) comO 2855850..2856560 (-) 711 WP_005018046.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q5709_RS13600 (Q5709_13605) pilN 2856557..2857216 (-) 660 WP_005018044.1 PilN domain-containing protein Machinery gene
  Q5709_RS13605 (Q5709_13610) pilM 2857216..2858274 (-) 1059 WP_005018042.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 726 a.a.        Molecular weight: 78727.37 Da        Isoelectric Point: 5.4948

>NTDB_id=862651 Q5709_RS13585 WP_005018050.1 2853128..2855308(-) (pilQ) [Acinetobacter radioresistens strain MC-14]
MKKSFQEFLMGDGNSMIHLYRQFAMGAVAAAMMQVASAAVNITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLI
LDFDQAKQNLKQPSIPVATNEASAIHVASDEQRSRIIVSLKDAGAFTTRVEGNTFILKINPVTGAPTVLPQPVAVAQQPA
QGISNIGFQRGSQGEGQVLIDFLNPNTPADVQQQGSKVIVRMLGNKIPSHLIRRLNMNDFATPVSTVDAYNEGGNGIITI
QSTGSYEYMAYQTENRLTVSLKRPEEKSTVKTRSAPNYSGKKVSLDFQDIEVRRVLQLLADFTGINLVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGDIIWIAPVAELIKAEEEEAKAIAQSTRLMPLQTEYIQLNYAKAVDIEKLITQGRN
SGNGSANGASNNTEALGDSVGSLLSPRGTISIDPRTNTLIINDTAQKLDQIRRMIDLLDVAVKQVMVEARIVRASTDFTK
EMGVKWGILSQGITRNNSLLVGGSETTLWNLRDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSA
LQADGYGEVISTPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQMLLNITSDTPG
NPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSDNKRELLIFVTPRIVND
SATGNH

Nucleotide


Download         Length: 2181 bp        

>NTDB_id=862651 Q5709_RS13585 WP_005018050.1 2853128..2855308(-) (pilQ) [Acinetobacter radioresistens strain MC-14]
ATGAAAAAGAGTTTTCAAGAATTTTTGATGGGGGATGGCAACAGCATGATTCATTTATATCGTCAATTTGCGATGGGAGC
AGTTGCTGCAGCAATGATGCAGGTAGCAAGTGCAGCGGTCAATATTACCAATATTGTACCTATGCAGATTCCGGGACAAG
GGACAGAAATTCGAGTCATGTTTAATGGATTGCCACCCCAGCCCCAGGCTTATCAGCTTGAACAGCCTTCGCGACTGATC
TTAGACTTTGATCAGGCCAAGCAAAATCTTAAACAGCCTAGTATTCCGGTTGCTACCAATGAAGCAAGCGCAATTCATGT
GGCCTCTGATGAACAACGTTCCCGAATTATTGTAAGTTTAAAAGATGCAGGTGCCTTTACTACCCGTGTAGAAGGTAATA
CTTTTATTTTAAAGATTAATCCGGTAACAGGCGCGCCTACAGTATTGCCACAGCCAGTTGCTGTAGCACAGCAGCCTGCT
CAGGGTATCTCGAACATTGGTTTCCAGCGTGGAAGTCAGGGCGAGGGACAGGTTTTAATTGATTTTCTGAACCCGAATAC
TCCTGCTGATGTACAGCAGCAGGGAAGTAAAGTCATAGTTAGGATGCTGGGAAATAAAATCCCTTCCCATCTAATCCGCC
GCTTGAATATGAATGATTTTGCCACGCCGGTCTCGACTGTTGATGCCTATAATGAAGGCGGTAATGGTATTATTACTATT
CAATCAACTGGCAGTTATGAATATATGGCGTACCAGACTGAGAACCGCTTAACAGTCAGTTTAAAGCGCCCGGAAGAAAA
GAGTACGGTCAAAACCCGTTCTGCACCTAATTATAGTGGTAAAAAGGTTTCACTCGACTTTCAGGATATTGAAGTTCGTC
GGGTATTACAGTTGTTAGCAGATTTCACTGGTATCAACCTGGTTGCAGCCGACTCTGTTCAGGGAAATATTACGTTGCGC
CTGAAAGATGTACCATGGGACCAGGCTTTAGACATTATTTTAAAAACCAAAAACCTAGATAAACGTCGTAATGGTGATAT
AATCTGGATTGCTCCGGTTGCAGAGCTGATTAAAGCAGAAGAGGAAGAGGCTAAGGCGATTGCGCAAAGTACCAGACTTA
TGCCTTTACAAACTGAATATATCCAGCTGAATTATGCAAAAGCTGTCGATATCGAAAAATTGATTACCCAAGGCAGAAAT
AGTGGTAATGGTAGTGCTAACGGTGCTTCAAACAATACGGAAGCACTGGGTGATAGCGTAGGGAGCCTGCTGAGTCCAAG
AGGAACCATTTCAATAGACCCACGTACTAATACCTTAATCATTAATGATACTGCTCAGAAACTTGACCAGATCCGCCGTA
TGATTGATCTTCTGGATGTAGCGGTAAAACAGGTGATGGTTGAAGCCCGTATTGTCAGGGCTAGTACTGACTTCACCAAA
GAAATGGGCGTGAAGTGGGGAATTCTTTCACAGGGTATTACCCGTAATAACAGCCTGCTAGTCGGCGGCAGTGAAACTAC
CTTATGGAATCTGCGTGATCCTGATGACGATGGTAAATACACCATAGAGCGTCCACAAAACTTGAATGTGGATTTAGGCG
TTACAGCATCGGGTGCAAGCCGTATTGCCTTCGGTTTAATTAGTCTTTCTGATTTTATGCTGGATCTCGAATTGTCAGCC
TTGCAGGCTGATGGTTATGGTGAAGTCATTTCTACGCCGAAAGTACTAACAGCTGACAAACAGCAGGCCCGAGTTGCTTC
TGGTACCCAAATTCCCTACCAGTCTTCAGAGGGCGGTGGCGCCAATGCAGTCTCTACCACTGAATTTGTGGATGCCACTT
TAAGTCTGAATGTAACACCAAGTATTACCCCTGATGGTAAAATCCAGATGTTGCTGAACATTACCAGCGATACTCCGGGG
AACCCGACACCAACCGGACAGATTGCGATTAACAAGAATGAAATTAATACTAATGTGCTGGTTAACAATGGTGAAACTGT
AGTCCTTGGCGGTATTTTTGAACAGGAAACTAGGAATACGCAAACGAAAGTACCTGTTCTCGGAGACCTGCCGGGTGTAG
GCCGTTTATTCCGCCGTGATGCTAAAAGTGATAACAAGCGTGAGTTACTGATTTTTGTTACACCACGAATTGTTAATGAC
AGTGCGACTGGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(379-464)

AMIN domain (AMIN)

(55-136)

Secretin and TonB N terminus short domain (STN)

(307-352)

Bacterial type II and III secretion system protein (Secretin)

(560-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.003

100

0.73
  pilQ Acinetobacter baumannii strain A118

72.865

100

0.729
  comQ Acinetobacter baylyi ADP1

72.931

98.209

0.716
  pilQ Pseudomonas aeruginosa PAK

39.781

100

0.399
  pilQ Legionella pneumophila strain Lp02

38.24

95.455

0.365
  pilQ Legionella pneumophila strain ERS1305867

38.129

95.73

0.365