Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   Q5709_RS13595 Genome accession   NZ_CP131483
Coordinates   2855850..2856560 (-) Length   236 a.a.
NCBI ID   WP_005018046.1    Uniprot ID   A0A062C2H2
Organism   Acinetobacter radioresistens strain MC-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2850850..2861560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS13575 (Q5709_13580) aroB 2851436..2852521 (-) 1086 WP_005018054.1 3-dehydroquinate synthase -
  Q5709_RS13580 (Q5709_13585) aroK 2852540..2853091 (-) 552 WP_005018052.1 shikimate kinase AroK -
  Q5709_RS13585 (Q5709_13590) pilQ 2853128..2855308 (-) 2181 WP_005018050.1 type IV pilus secretin PilQ Machinery gene
  Q5709_RS13590 (Q5709_13595) pilP 2855326..2855853 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  Q5709_RS13595 (Q5709_13600) comO 2855850..2856560 (-) 711 WP_005018046.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q5709_RS13600 (Q5709_13605) pilN 2856557..2857216 (-) 660 WP_005018044.1 PilN domain-containing protein Machinery gene
  Q5709_RS13605 (Q5709_13610) pilM 2857216..2858274 (-) 1059 WP_005018042.1 pilus assembly protein PilM Machinery gene
  Q5709_RS13610 (Q5709_13615) ponA 2858436..2860982 (+) 2547 WP_416393920.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26973.30 Da        Isoelectric Point: 4.5249

>NTDB_id=862653 Q5709_RS13595 WP_005018046.1 2855850..2856560(-) (comO) [Acinetobacter radioresistens strain MC-14]
MSREEFDDLNQEDVKPAKRKMTLEAFLQQFNTLDTHNYGSWPFSVKLTCWIFLFLLVCAIGYFLAIRPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNEQLEQLPKETEIPGLVEDINVAGVSSGLKFKNIRLESEIRQEFFIEQP
IDIQATGDYHAFGSFVSTIAALPRIVTLHDFEITSTQAQNSDIPEVNYAVKAKTYRYVGNNEQPNTTNTPAGGQPQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=862653 Q5709_RS13595 WP_005018046.1 2855850..2856560(-) (comO) [Acinetobacter radioresistens strain MC-14]
ATGAGTCGTGAAGAATTTGATGATTTAAACCAGGAAGATGTTAAACCTGCTAAAAGAAAAATGACGCTAGAAGCCTTCCT
GCAACAGTTTAACACTCTGGATACACATAATTACGGCAGCTGGCCTTTTTCAGTCAAACTGACCTGCTGGATATTTCTGT
TCCTGCTGGTTTGTGCAATTGGCTATTTCTTAGCAATTCGCCCCAAACTTGAAGCTATTTCTAATGCGCAGGCACAAGAA
CAGAATTTGTTAAACGAGTTTCGTGAAAAGGACTCCAAACTGCGTAACTTGCAGCAATACCAGGCACAACTACAGGAAAT
GGAAGCGAATTTTAATGAGCAACTGGAACAGTTGCCTAAAGAAACCGAGATTCCTGGACTGGTTGAAGATATTAACGTTG
CAGGAGTAAGTTCTGGCCTGAAATTTAAAAATATTCGTCTGGAAAGTGAAATTCGGCAGGAGTTCTTTATTGAACAGCCA
ATTGATATTCAGGCAACAGGTGATTATCATGCCTTTGGTTCTTTTGTGAGCACTATTGCGGCGCTTCCACGAATTGTAAC
CCTGCATGACTTTGAAATTACCAGTACACAGGCGCAGAACTCAGACATTCCAGAAGTAAATTATGCGGTGAAAGCTAAAA
CATACCGATATGTCGGTAATAATGAGCAGCCAAATACTACGAATACCCCAGCAGGAGGGCAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062C2H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.755

100

0.703
  pilO Acinetobacter baumannii D1279779

68.644

100

0.686