Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q4617_RS01820 Genome accession   NZ_CP131470
Coordinates   384568..385101 (-) Length   177 a.a.
NCBI ID   WP_112986761.1    Uniprot ID   A0A365PI41
Organism   Acinetobacter junii strain SC22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379568..390101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS01790 (Q4617_01790) - 379662..381719 (+) 2058 WP_112986756.1 hypothetical protein -
  Q4617_RS01795 (Q4617_01795) - 381723..382079 (+) 357 WP_112986757.1 hypothetical protein -
  Q4617_RS01800 (Q4617_01800) - 382142..382579 (-) 438 WP_112986758.1 hypothetical protein -
  Q4617_RS01805 (Q4617_01805) - 382670..383404 (-) 735 WP_112986759.1 DUF2971 domain-containing protein -
  Q4617_RS01810 (Q4617_01810) tfpZ 383474..384208 (-) 735 WP_112986760.1 TfpX/TfpZ family type IV pilin accessory protein -
  Q4617_RS01815 (Q4617_01815) - 384298..384480 (-) 183 WP_227540279.1 hypothetical protein -
  Q4617_RS01820 (Q4617_01820) pilE 384568..385101 (-) 534 WP_112986761.1 pilin Machinery gene
  Q4617_RS01825 (Q4617_01825) - 385522..385785 (+) 264 WP_112986762.1 hypothetical protein -
  Q4617_RS01830 (Q4617_01830) - 386028..386663 (+) 636 WP_112986763.1 hypothetical protein -
  Q4617_RS01835 (Q4617_01835) - 386666..387373 (+) 708 WP_112986764.1 PIN domain-containing protein -
  Q4617_RS01840 (Q4617_01840) - 387496..388524 (-) 1029 WP_305156084.1 transposase -
  Q4617_RS01845 (Q4617_01845) - 388712..389200 (+) 489 WP_112986457.1 pilin -
  Q4617_RS01850 (Q4617_01850) - 389398..389913 (+) 516 WP_112986458.1 pilin -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 17633.23 Da        Isoelectric Point: 5.0664

>NTDB_id=862544 Q4617_RS01820 WP_112986761.1 384568..385101(-) (pilE) [Acinetobacter junii strain SC22]
MNTMEKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRAKISEVITAGAAAKSAISEGFQTNGMVGVASAATAVSKGAAAT
PVSKYLESIAASNAGIITLTTTADASLPTDAQQKTVLMVPYVSVAGTATALAAGQEGSIEWACGTTTITQATARAGATIG
GTATGTLPAKYAPSECR

Nucleotide


Download         Length: 534 bp        

>NTDB_id=862544 Q4617_RS01820 WP_112986761.1 384568..385101(-) (pilE) [Acinetobacter junii strain SC22]
ATGAATACAATGGAGAAGGGCTTCACGCTCATCGAACTTATGATTGTTGTCGCTATTATTGGTATTTTGGCTGCAGTAGC
GATTCCTGCGTACCAAGATTATACAGTTCGCGCGAAAATTTCTGAAGTTATTACGGCAGGAGCTGCTGCTAAATCTGCAA
TTTCTGAAGGCTTTCAAACTAATGGGATGGTAGGAGTAGCCTCGGCTGCGACAGCGGTTTCAAAAGGTGCGGCTGCTACA
CCTGTAAGCAAATATTTAGAATCTATTGCTGCTAGTAATGCAGGTATCATTACACTTACAACGACAGCTGATGCTAGTTT
GCCAACTGATGCTCAGCAAAAGACAGTACTTATGGTTCCTTATGTAAGTGTTGCTGGTACTGCGACTGCTTTAGCTGCTG
GACAAGAAGGTTCAATTGAGTGGGCATGTGGTACAACAACTATTACACAAGCAACTGCTCGTGCAGGTGCTACTATTGGT
GGTACTGCAACTGGTACATTACCTGCAAAATATGCACCTTCTGAATGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-177)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365PI41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

46.632

100

0.508
  pilA Ralstonia pseudosolanacearum GMI1000

41.011

100

0.412
  pilA2 Legionella pneumophila str. Paris

41.618

97.74

0.407
  pilA2 Legionella pneumophila strain ERS1305867

41.618

97.74

0.407
  pilE Neisseria gonorrhoeae strain FA1090

38.172

100

0.401
  pilE Neisseria gonorrhoeae MS11

37.705

100

0.39
  comP Acinetobacter baylyi ADP1

39.306

97.74

0.384