Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | Q4437_RS12325 | Genome accession | NZ_CP130651 |
| Coordinates | 2666733..2667152 (+) | Length | 139 a.a. |
| NCBI ID | WP_005479693.1 | Uniprot ID | Q87LT8 |
| Organism | Vibrio parahaemolyticus strain HZ | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2661733..2672152
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q4437_RS12310 (Q4437_12310) | pdhR | 2663766..2664533 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| Q4437_RS12315 (Q4437_12315) | ampD | 2664939..2665490 (-) | 552 | WP_005479703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| Q4437_RS12320 (Q4437_12320) | nadC | 2665583..2666470 (+) | 888 | WP_005479699.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| Q4437_RS12325 (Q4437_12325) | pilA | 2666733..2667152 (+) | 420 | WP_005479693.1 | pilin | Machinery gene |
| Q4437_RS12330 (Q4437_12330) | pilB | 2667162..2668847 (+) | 1686 | WP_005479695.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Q4437_RS12335 (Q4437_12335) | pilC | 2668871..2670094 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| Q4437_RS12340 (Q4437_12340) | pilD | 2670159..2671028 (+) | 870 | WP_005490359.1 | A24 family peptidase | Machinery gene |
| Q4437_RS12345 (Q4437_12345) | coaE | 2671029..2671643 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14180.19 Da Isoelectric Point: 4.4684
>NTDB_id=860912 Q4437_RS12325 WP_005479693.1 2666733..2667152(+) (pilA) [Vibrio parahaemolyticus strain HZ]
MKHSKQKKQQGFTLIELMIVVAIIGVLAAAAIPAYQNYVTRSEVTSGLATVKALITPAELHYQENGIAAAATLAQLGVDV
AANDLGAIDSALAGGSPTLTFTFDADSSIDGGILTFTRDAATGWSCLPTAPAIAVDGCS
MKHSKQKKQQGFTLIELMIVVAIIGVLAAAAIPAYQNYVTRSEVTSGLATVKALITPAELHYQENGIAAAATLAQLGVDV
AANDLGAIDSALAGGSPTLTFTFDADSSIDGGILTFTRDAATGWSCLPTAPAIAVDGCS
Nucleotide
Download Length: 420 bp
>NTDB_id=860912 Q4437_RS12325 WP_005479693.1 2666733..2667152(+) (pilA) [Vibrio parahaemolyticus strain HZ]
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTCACTCTGATTGAGTTAATGATTGTGGTAGCGATTATCGGCGTTTT
GGCTGCAGCTGCTATCCCTGCTTATCAAAATTATGTGACTCGCTCTGAAGTTACATCAGGGTTAGCAACCGTTAAAGCTC
TGATCACACCGGCTGAGCTGCATTACCAAGAAAATGGTATCGCGGCGGCTGCAACATTAGCCCAATTGGGAGTTGATGTT
GCAGCTAATGACTTAGGAGCTATTGATTCTGCCCTTGCAGGTGGTAGTCCAACTCTGACATTTACCTTCGATGCAGACAG
TTCTATCGACGGTGGGATACTAACGTTCACAAGAGACGCTGCAACTGGTTGGTCATGTTTACCTACTGCACCAGCAATTG
CAGTCGATGGTTGCAGTTAA
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTCACTCTGATTGAGTTAATGATTGTGGTAGCGATTATCGGCGTTTT
GGCTGCAGCTGCTATCCCTGCTTATCAAAATTATGTGACTCGCTCTGAAGTTACATCAGGGTTAGCAACCGTTAAAGCTC
TGATCACACCGGCTGAGCTGCATTACCAAGAAAATGGTATCGCGGCGGCTGCAACATTAGCCCAATTGGGAGTTGATGTT
GCAGCTAATGACTTAGGAGCTATTGATTCTGCCCTTGCAGGTGGTAGTCCAACTCTGACATTTACCTTCGATGCAGACAG
TTCTATCGACGGTGGGATACTAACGTTCACAAGAGACGCTGCAACTGGTTGGTCATGTTTACCTACTGCACCAGCAATTG
CAGTCGATGGTTGCAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| pilA | Pseudomonas aeruginosa PAK |
48.507 |
96.403 |
0.468 |
| pilA | Vibrio cholerae strain A1552 |
41.892 |
100 |
0.446 |
| pilA | Vibrio cholerae C6706 |
41.892 |
100 |
0.446 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.892 |
100 |
0.446 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
35.862 |
100 |
0.374 |
| comF | Acinetobacter baylyi ADP1 |
36.691 |
100 |
0.367 |