Detailed information NTG0860915

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q4437_RS12340
• Genome accession: NZ_CP130651
• Coordinates: 2670159..2671028 (+)
• Length: 289 a.a.
• NCBI ID: WP_005490359.1
• Uniprot ID: Q87LT5
• Organism: Vibrio parahaemolyticus strain HZ
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2665159..2676028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q4437_RS12320 (Q4437_12320)	nadC	2665583..2666470 (+)	888	WP_005479699.1	carboxylating nicotinate-nucleotide diphosphorylase	-
Q4437_RS12325 (Q4437_12325)	pilA	2666733..2667152 (+)	420	WP_005479693.1	pilin	Machinery gene
Q4437_RS12330 (Q4437_12330)	pilB	2667162..2668847 (+)	1686	WP_005479695.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q4437_RS12335 (Q4437_12335)	pilC	2668871..2670094 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
Q4437_RS12340 (Q4437_12340)	pilD	2670159..2671028 (+)	870	WP_005490359.1	A24 family peptidase	Machinery gene
Q4437_RS12345 (Q4437_12345)	coaE	2671029..2671643 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
Q4437_RS12350 (Q4437_12350)	zapD	2671671..2672411 (+)	741	WP_005480890.1	cell division protein ZapD	-
Q4437_RS12355 (Q4437_12355)	yacG	2672480..2672674 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
Q4437_RS12360 (Q4437_12360)	rplS	2673069..2673422 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
Q4437_RS12365 (Q4437_12365)	trmD	2673464..2674207 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
Q4437_RS12370 (Q4437_12370)	rimM	2674235..2674783 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
Q4437_RS12375 (Q4437_12375)	rpsP	2674812..2675060 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32453.53 Da
• Isoelectric Point: 7.1971

>NTDB_id=860915 Q4437_RS12340 WP_005490359.1 2670159..2671028(+) (pilD) [Vibrio parahaemolyticus strain HZ]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFFLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=860915 Q4437_RS12340 WP_005490359.1 2670159..2671028(+) (pilD) [Vibrio parahaemolyticus strain HZ]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTTTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: Q87LT5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.292	93.772	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453