Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Atep_RS06935 Genome accession   NZ_AP024563
Coordinates   1435850..1437367 (+) Length   505 a.a.
NCBI ID   WP_213381079.1    Uniprot ID   -
Organism   Allochromatium tepidum strain NZ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1430850..1442367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Atep_RS06905 (Atep_13450) - 1430868..1431821 (-) 954 WP_213381074.1 HD-GYP domain-containing protein -
  Atep_RS06910 (Atep_13460) - 1431911..1432333 (-) 423 WP_213381075.1 BLUF domain-containing protein -
  Atep_RS06915 (Atep_13470) - 1432574..1433923 (-) 1350 WP_272876312.1 ammonium transporter -
  Atep_RS06920 (Atep_13480) glnK 1433948..1434286 (-) 339 WP_213381076.1 P-II family nitrogen regulator -
  Atep_RS06925 (Atep_13490) - 1434421..1435143 (-) 723 WP_213381077.1 TorF family putative porin -
  Atep_RS06930 (Atep_13500) ubiK 1435568..1435834 (+) 267 WP_213381078.1 ubiquinone biosynthesis accessory factor UbiK -
  Atep_RS06935 (Atep_13510) comM 1435850..1437367 (+) 1518 WP_213381079.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Atep_RS06940 (Atep_13520) pilU 1437496..1438731 (+) 1236 WP_213381082.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  Atep_RS06945 (Atep_13530) pilU 1438758..1439813 (+) 1056 WP_213381083.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  Atep_RS06950 (Atep_13540) - 1439838..1440407 (-) 570 WP_213381084.1 Uma2 family endonuclease -
  Atep_RS06955 (Atep_13550) - 1440471..1440782 (-) 312 WP_213381464.1 Wadjet anti-phage system protein JetD domain-containing protein -
  Atep_RS06960 (Atep_13560) - 1440710..1441222 (-) 513 WP_213381466.1 AAA family ATPase -
  Atep_RS06965 (Atep_13570) - 1441282..1442046 (-) 765 WP_213381468.1 arginyltransferase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54598.92 Da        Isoelectric Point: 8.4121

>NTDB_id=86016 Atep_RS06935 WP_213381079.1 1435850..1437367(+) (comM) [Allochromatium tepidum strain NZ]
MGLCVLHSRGRLGIEAPPVTVEVQLSGGLPAMSIVGLPEMAVRESKDRVHGALVNNKFQIPNGRVTINLAPADLPKEGGR
FDLPIALGTLGAMGQIRTDLLEHYEFIGELALSGALRPIQGVLPIALAARAAGRALILPEANAAEAAIVEGLEVRPAAHL
REVCAHLNGAEPLAVQRGDDRFQLRPEYPDLSDVRGQEHGKRGLEIAASGGHSILMVGPPGTGKSMLAMRLPGLLPPLSE
SEALEAAAIRSVGGRDPFDPARWLERPFRSPHHTASAVALVGGGTHPRPGEISLAHHGVLFLDELPEFDRRVLEVLREPL
ESGWIDISRAARQVRFPARFQMVAAMNPCPCGYLGDSTGRCHCSTEQVARYRRRLSGPLLDRIDLHVEVLRLEVGQLTGP
TPRTTETTAQVRARVMAARERQLARAGKPNAALAPAEIERDCVLDTAGRRLMEQALTRLALSARAYHRILKVARTIADLA
DAERIDTTHLSEAIGYRRLDRGVKV

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=86016 Atep_RS06935 WP_213381079.1 1435850..1437367(+) (comM) [Allochromatium tepidum strain NZ]
TTGGGCCTGTGCGTATTGCACAGCCGCGGGCGGCTCGGGATCGAGGCCCCGCCCGTGACCGTGGAGGTCCAGCTCTCGGG
CGGACTGCCCGCGATGTCGATCGTGGGTCTGCCCGAGATGGCGGTGCGCGAGAGCAAGGATCGAGTCCATGGCGCGCTCG
TCAACAACAAATTCCAAATCCCCAACGGGCGGGTCACGATCAATCTCGCCCCCGCCGATCTGCCCAAGGAGGGCGGGCGC
TTCGATCTGCCGATCGCGCTCGGCACCCTGGGCGCCATGGGCCAGATCAGGACCGATCTGCTCGAACACTACGAGTTCAT
CGGCGAGCTGGCCCTGTCCGGCGCGCTGCGCCCGATCCAGGGCGTGCTCCCGATCGCCCTGGCCGCGCGCGCGGCCGGTC
GGGCGCTGATCCTGCCCGAGGCGAACGCCGCCGAGGCCGCCATCGTCGAGGGGTTGGAGGTGCGCCCGGCGGCGCATCTG
CGCGAGGTCTGCGCCCATCTCAACGGCGCCGAACCGCTCGCCGTCCAGCGTGGCGACGATCGCTTCCAGCTCCGCCCCGA
GTATCCGGACCTGTCCGATGTGCGCGGTCAGGAGCACGGCAAGCGCGGACTGGAGATCGCGGCGAGCGGCGGACACTCGA
TCCTGATGGTCGGACCGCCCGGCACCGGCAAATCGATGCTGGCCATGCGTCTGCCGGGCCTGCTGCCGCCATTGAGCGAG
TCCGAGGCGCTGGAGGCGGCGGCGATCCGCTCGGTCGGCGGACGCGATCCTTTCGATCCGGCGCGCTGGCTGGAACGTCC
CTTTCGCTCGCCGCATCACACCGCCTCGGCCGTGGCCCTGGTCGGCGGCGGCACCCATCCGCGACCGGGCGAGATCTCGC
TGGCCCATCATGGCGTGCTCTTTCTCGACGAGCTGCCCGAGTTCGATCGCCGGGTGCTGGAGGTGTTGCGCGAGCCGCTG
GAGTCGGGTTGGATCGACATCTCGCGAGCCGCGCGTCAGGTCCGCTTTCCGGCGCGCTTTCAGATGGTCGCGGCCATGAA
CCCCTGTCCCTGCGGCTATCTGGGCGACAGCACCGGACGCTGCCATTGCAGCACCGAGCAGGTGGCGCGGTATCGCCGAC
GCCTCTCAGGTCCGCTGCTCGACCGCATCGATCTGCATGTCGAGGTCTTGCGCCTGGAGGTGGGTCAGCTCACCGGACCG
ACGCCGCGTACGACCGAAACCACGGCCCAGGTGCGCGCCCGGGTGATGGCCGCGCGCGAACGCCAGCTCGCGCGCGCCGG
TAAGCCCAATGCCGCCCTGGCGCCCGCCGAGATCGAGCGTGACTGCGTGCTCGACACCGCCGGCCGGCGGCTGATGGAAC
AGGCTCTGACGCGGCTCGCACTCTCGGCGCGCGCCTACCATCGCATCCTCAAGGTCGCGCGCACCATCGCCGATCTGGCC
GACGCCGAGCGCATCGACACCACACATCTGAGCGAGGCCATCGGCTATCGACGGCTCGATCGGGGCGTGAAAGTTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.357

99.802

0.552
  comM Vibrio campbellii strain DS40M4

54.96

99.802

0.549
  comM Glaesserella parasuis strain SC1401

53.571

99.802

0.535
  comM Haemophilus influenzae Rd KW20

52.767

100

0.529
  comM Legionella pneumophila str. Paris

50.201

98.614

0.495
  comM Legionella pneumophila strain ERS1305867

50.201

98.614

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.598

98.614

0.489

Multiple sequence alignment