Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QYC30_RS00340 Genome accession   NZ_CP130347
Coordinates   69761..70126 (-) Length   121 a.a.
NCBI ID   WP_149817109.1    Uniprot ID   -
Organism   Thermosynechococcus sp. JY1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 64761..75126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC30_RS00330 (QYC30_00330) - 65847..69026 (-) 3180 WP_302676940.1 methyl-accepting chemotaxis protein -
  QYC30_RS00335 (QYC30_00335) - 69226..69756 (-) 531 WP_149817107.1 chemotaxis protein CheW -
  QYC30_RS00340 (QYC30_00340) pilH 69761..70126 (-) 366 WP_149817109.1 response regulator transcription factor Machinery gene
  QYC30_RS00345 (QYC30_00345) - 70207..71397 (-) 1191 WP_302676941.1 response regulator -
  QYC30_RS00350 (QYC30_00350) - 71456..72091 (-) 636 WP_302676942.1 MerR family transcriptional regulator -
  QYC30_RS00355 (QYC30_00355) aroA 72415..73737 (-) 1323 WP_206200581.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  QYC30_RS00360 (QYC30_00360) - 73786..74328 (-) 543 WP_302676943.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13520.60 Da        Isoelectric Point: 4.5748

>NTDB_id=858093 QYC30_RS00340 WP_149817109.1 69761..70126(-) (pilH) [Thermosynechococcus sp. JY1339]
MSKVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNGYEVCRQIKSDPRTQSIPVVI
CSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=858093 QYC30_RS00340 WP_149817109.1 69761..70126(-) (pilH) [Thermosynechococcus sp. JY1339]
ATGAGTAAAGTCTTAGTTGTCGAAGATAGTCCACCCCAGCGGGAAATGATCAGCGAATTGCTGGCGAAAACAGGCTTTGA
AGTAACCGTTGCCACCGATGGTGTCGAGGCAATGGAGCAATTGCAGCAGAGCACGCCCGATGTGGTTGTCCTCGACATTG
TCATGCCCCGCATGAATGGGTATGAAGTCTGTCGCCAAATTAAGTCCGACCCCCGCACCCAATCCATTCCCGTGGTGATC
TGTAGCTCCAAAGGTGAGGAGTTTGATCGCTATTGGGGCATGAAACAGGGGGCTGATGCGTATATTACGAAGCCCTTTGA
CCCCAAAGAATTGGTTGGCACCATCAAGCAACTCTTGCGAGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.727

100

0.727
  pilG Acinetobacter baumannii strain A118

42.609

95.041

0.405
  micA Streptococcus pneumoniae Cp1015

40.833

99.174

0.405
  pilL-C Synechocystis sp. PCC 6803

40.336

98.347

0.397
  scnR Streptococcus mutans UA159

39.496

98.347

0.388
  vicR Streptococcus mutans UA159

36.667

99.174

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364