Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QYC28_RS00345 Genome accession   NZ_CP130346
Coordinates   72000..72365 (-) Length   121 a.a.
NCBI ID   WP_149817109.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HY596     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67000..77365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC28_RS00335 (QYC28_00335) - 68095..71265 (-) 3171 WP_302679660.1 methyl-accepting chemotaxis protein -
  QYC28_RS00340 (QYC28_00340) - 71465..71995 (-) 531 WP_149817107.1 chemotaxis protein CheW -
  QYC28_RS00345 (QYC28_00345) pilH 72000..72365 (-) 366 WP_149817109.1 response regulator transcription factor Machinery gene
  QYC28_RS00350 (QYC28_00350) - 72446..73636 (-) 1191 WP_149817111.1 response regulator -
  QYC28_RS00355 (QYC28_00355) - 73694..74329 (-) 636 WP_149817113.1 MerR family transcriptional regulator -
  QYC28_RS00360 (QYC28_00360) aroA 74651..75973 (-) 1323 WP_149817115.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  QYC28_RS00365 (QYC28_00365) - 76022..76564 (-) 543 WP_149817117.1 TIGR04376 family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13520.60 Da        Isoelectric Point: 4.5748

>NTDB_id=858077 QYC28_RS00345 WP_149817109.1 72000..72365(-) (pilH) [Thermosynechococcus sp. HY596]
MSKVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNGYEVCRQIKSDPRTQSIPVVI
CSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=858077 QYC28_RS00345 WP_149817109.1 72000..72365(-) (pilH) [Thermosynechococcus sp. HY596]
ATGAGTAAAGTCTTAGTTGTCGAAGATAGTCCACCCCAGCGGGAAATGATCAGCGAATTGCTGGCGAAAACAGGCTTTGA
AGTAACCGTTGCCACCGATGGTGTCGAGGCAATGGAGCAATTGCAGCAGAGCACGCCCGATGTGGTTGTCCTCGACATTG
TCATGCCCCGCATGAATGGGTATGAAGTCTGTCGCCAAATTAAGTCCGACCCCCGCACCCAATCCATTCCCGTGGTGATC
TGTAGCTCCAAAGGTGAGGAGTTTGATCGCTATTGGGGCATGAAACAGGGGGCTGATGCGTACATTACGAAGCCCTTTGA
CCCCAAAGAACTGGTTGGCACCATCAAGCAACTCTTGCGAGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.727

100

0.727
  pilG Acinetobacter baumannii strain A118

42.609

95.041

0.405
  micA Streptococcus pneumoniae Cp1015

40.833

99.174

0.405
  pilL-C Synechocystis sp. PCC 6803

40.336

98.347

0.397
  scnR Streptococcus mutans UA159

39.496

98.347

0.388
  vicR Streptococcus mutans UA159

36.667

99.174

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364