Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q2E61_RS05415 Genome accession   NZ_CP130317
Coordinates   1276866..1278077 (-) Length   403 a.a.
NCBI ID   WP_067152291.1    Uniprot ID   A0A143HK76
Organism   Microbulbifer thermotolerans strain HB226069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271866..1283077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2E61_RS05390 (Q2E61_05390) argJ 1273317..1274519 (+) 1203 WP_266072141.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  Q2E61_RS05395 (Q2E61_05395) mutT 1274519..1274923 (+) 405 WP_266067121.1 8-oxo-dGTP diphosphatase MutT -
  Q2E61_RS05400 (Q2E61_05400) yacG 1275016..1275225 (-) 210 WP_067157507.1 DNA gyrase inhibitor YacG -
  Q2E61_RS05405 (Q2E61_05405) coaE 1275234..1275845 (-) 612 WP_323054245.1 dephospho-CoA kinase -
  Q2E61_RS05410 (Q2E61_05410) pilD 1275976..1276860 (-) 885 WP_067152289.1 A24 family peptidase Machinery gene
  Q2E61_RS05415 (Q2E61_05415) pilC 1276866..1278077 (-) 1212 WP_067152291.1 type II secretion system F family protein Machinery gene
  Q2E61_RS05420 (Q2E61_05420) pilB 1278147..1279859 (-) 1713 WP_067152294.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q2E61_RS05425 (Q2E61_05425) pilA 1280317..1280745 (+) 429 WP_067157510.1 pilin Machinery gene
  Q2E61_RS05430 (Q2E61_05430) - 1280856..1282733 (+) 1878 WP_074900632.1 hypothetical protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43534.30 Da        Isoelectric Point: 9.2880

>NTDB_id=857679 Q2E61_RS05415 WP_067152291.1 1276866..1278077(-) (pilC) [Microbulbifer thermotolerans strain HB226069]
MANAAAVTYVYKGVDSKGNKVEGEINGTSPALIKAQLRKQGIIANRVQKKPKPLFGGKKKVKPEDIALFTRQMATMMKAG
VPLVQSFEIVADGLDNQGVKELIFKIRDDVASGTAFADALRKHPLYFDDLFCNLVASGEQSGALETMLDRIATYKEKTES
LKKKIKKAMTYPIAVIVVAIVVTSILLIKVVPQFAETFSSFGADLPAFTQMVVGMSEWMQANWFIALICAVIGIGGTLEA
KKRNKKVADFFDRLILKMPILGQITYNSIAARFARTLSTTFAAGVPLIDALKSVAGATGNVIYEDATLKIRDSVATGIPL
NGAMRASNLYPTMLVQMAAIGEESGALDEMLGKAADFYEEAVDNMVDNLTTLLEPMIMAVLGILVGGLMVAMYLPIFQLG
QVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=857679 Q2E61_RS05415 WP_067152291.1 1276866..1278077(-) (pilC) [Microbulbifer thermotolerans strain HB226069]
ATGGCCAACGCCGCAGCGGTCACCTACGTCTACAAGGGTGTGGACAGTAAAGGCAACAAGGTCGAGGGAGAGATCAACGG
CACCAGCCCTGCGCTGATCAAGGCGCAGCTGCGCAAGCAGGGCATTATAGCCAACCGGGTGCAGAAAAAGCCCAAACCCT
TATTTGGCGGCAAGAAAAAAGTCAAACCTGAAGATATCGCGCTGTTCACACGGCAGATGGCCACCATGATGAAGGCCGGG
GTGCCACTGGTACAGAGCTTCGAAATCGTCGCCGACGGCCTGGACAATCAGGGCGTTAAGGAACTGATTTTTAAAATCCG
CGACGACGTGGCCTCCGGTACCGCCTTTGCCGATGCCCTGCGCAAGCACCCGCTCTATTTCGACGATCTCTTCTGCAACC
TGGTGGCCTCCGGTGAGCAGTCCGGCGCCCTGGAAACCATGCTGGACCGCATCGCCACCTATAAAGAAAAAACCGAATCC
CTGAAGAAAAAAATCAAAAAGGCGATGACCTACCCGATTGCGGTAATCGTTGTCGCCATTGTGGTTACCTCTATTCTGCT
GATCAAGGTAGTACCCCAGTTCGCCGAAACCTTCTCCAGCTTTGGCGCCGACCTGCCGGCATTTACCCAAATGGTAGTGG
GTATGTCTGAGTGGATGCAGGCCAACTGGTTTATTGCCCTGATTTGTGCAGTAATCGGGATCGGGGGTACCCTTGAAGCC
AAAAAGCGCAACAAAAAAGTGGCCGATTTCTTTGACCGGTTAATCCTCAAAATGCCAATTCTCGGCCAGATTACCTATAA
CTCCATCGCCGCCCGTTTCGCCCGTACGCTGTCCACCACTTTCGCCGCGGGTGTTCCCTTGATCGATGCCCTAAAGTCCG
TTGCTGGCGCCACCGGCAATGTGATTTATGAGGACGCCACCCTTAAAATCCGCGATTCTGTGGCCACCGGTATTCCGCTC
AACGGCGCCATGCGCGCTTCCAACCTCTACCCCACCATGCTGGTACAGATGGCCGCGATTGGTGAAGAGTCTGGCGCCCT
GGACGAAATGCTGGGCAAGGCCGCGGACTTTTACGAGGAGGCCGTGGACAATATGGTGGATAATCTGACAACCCTGCTGG
AACCGATGATTATGGCGGTGCTGGGTATTCTGGTCGGCGGCCTGATGGTGGCTATGTATCTGCCGATCTTCCAACTGGGT
CAGGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143HK76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

62.814

98.759

0.62
  pilC Pseudomonas stutzeri DSM 10701

63.291

98.015

0.62
  pilC Acinetobacter baylyi ADP1

62.469

98.511

0.615
  pilC Legionella pneumophila strain ERS1305867

57.75

99.256

0.573
  pilG Neisseria gonorrhoeae MS11

45.455

98.263

0.447
  pilG Neisseria meningitidis 44/76-A

45.202

98.263

0.444
  pilC Vibrio cholerae strain A1552

41.667

98.263

0.409
  pilC Vibrio campbellii strain DS40M4

40.704

98.759

0.402