Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   STYK_RS04670 Genome accession   NZ_AP024523
Coordinates   902988..903638 (+) Length   216 a.a.
NCBI ID   WP_000452009.1    Uniprot ID   A0AAX3TJY5
Organism   Streptococcus toyakuensis strain TP1632     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897988..908638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS04655 (STYK_08630) - 899037..900875 (+) 1839 WP_261805325.1 G5 domain-containing protein -
  STYK_RS04660 (STYK_08640) ald 901064..902176 (-) 1113 WP_000904686.1 alanine dehydrogenase -
  STYK_RS04665 (STYK_08650) - 902352..902921 (+) 570 WP_101799975.1 GNAT family N-acetyltransferase -
  STYK_RS04670 (STYK_08660) comEA/celA/cilE 902988..903638 (+) 651 WP_000452009.1 helix-hairpin-helix domain-containing protein Machinery gene
  STYK_RS04675 (STYK_08670) comEC/celB 903622..905862 (+) 2241 WP_261805326.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  STYK_RS04680 (STYK_08680) infC 906082..906612 (+) 531 WP_000848180.1 translation initiation factor IF-3 -
  STYK_RS04685 (STYK_08690) rpmI 906645..906845 (+) 201 WP_001125943.1 50S ribosomal protein L35 -
  STYK_RS04690 (STYK_08700) rplT 906897..907256 (+) 360 WP_000124834.1 50S ribosomal protein L20 -
  STYK_RS04695 (STYK_08710) - 907315..907695 (+) 381 WP_000157153.1 VOC family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23135.27 Da        Isoelectric Point: 5.5171

>NTDB_id=85743 STYK_RS04670 WP_000452009.1 902988..903638(+) (comEA/celA/cilE) [Streptococcus toyakuensis strain TP1632]
MEVIIEKIKEYKIIVICAGLGLALGGFFLLKPTSQTSVKETNLQAEVAAVSKDSSSEKEVNKEEKEESPEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEVASQQTASGTASSTSKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGAKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=85743 STYK_RS04670 WP_000452009.1 902988..903638(+) (comEA/celA/cilE) [Streptococcus toyakuensis strain TP1632]
ATGGAAGTCATTATCGAAAAAATCAAAGAGTATAAAATCATTGTCATCTGTGCTGGTTTGGGTTTAGCCTTAGGCGGATT
TTTCCTGTTAAAACCAACTTCACAAACATCTGTGAAAGAAACAAATTTGCAGGCTGAAGTCGCAGCTGTTTCAAAGGATT
CATCGTCTGAAAAAGAAGTGAACAAGGAAGAGAAGGAAGAATCTCCTGAACAAGATCTGATAACAGTAGATGTCAAAGGT
GCTGTTAAATCGCCAGGGATTTATGACTTGCCAGTAGGTAGTCGTGTCAATGATGCTGTTCAAAAGGCGGGTGGCTTGAC
AGAGCAAGCAGACAGCAAATCGCTCAATCTAGCTCAGAAAGTTAGTGATGAAGCTCTGGTTTACGTTCCAACTAAGGGAG
AAGAAGTAGCTAGTCAACAGACTGCTTCTGGGACGGCCTCTTCGACGAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAAGGACTTGGTGGCAAACGAGCCCAGGATATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCGGTTGATGAATTAAAGAAGGTTTCTGGTATTGGCGCTAAGACCATAGAAAAGCTAAAAGACTATGTTA
CAGTGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(151-214)

SLBB domain (SLBB)

(76-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

93.056

100

0.931
  comEA/celA/cilE Streptococcus mitis NCTC 12261

92.593

100

0.926
  comEA/celA/cilE Streptococcus pneumoniae Rx1

92.13

100

0.921
  comEA/celA/cilE Streptococcus pneumoniae D39

92.13

100

0.921
  comEA/celA/cilE Streptococcus pneumoniae R6

92.13

100

0.921
  comEA/celA/cilE Streptococcus mitis SK321

89.352

100

0.894
  comEA Lactococcus lactis subsp. cremoris KW2

44.053

100

0.463
  comEA Latilactobacillus sakei subsp. sakei 23K

34.335

100

0.37
  comEA Staphylococcus aureus MW2

35.616

100

0.361

Multiple sequence alignment