Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q2T42_RS12150 Genome accession   NZ_CP130144
Coordinates   2650430..2650795 (-) Length   121 a.a.
NCBI ID   WP_017290869.1    Uniprot ID   A0AA97ASN3
Organism   Leptolyngbya boryana CZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2645430..2655795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T42_RS12140 (Q2T42_12125) pilJ 2646993..2649632 (-) 2640 WP_287455757.1 methyl-accepting chemotaxis protein Machinery gene
  Q2T42_RS12145 (Q2T42_12130) - 2649888..2650418 (-) 531 WP_017290868.1 chemotaxis protein CheW -
  Q2T42_RS12150 (Q2T42_12135) pilH 2650430..2650795 (-) 366 WP_017290869.1 response regulator transcription factor Machinery gene
  Q2T42_RS12155 (Q2T42_12140) - 2650924..2652156 (-) 1233 WP_190648439.1 response regulator -
  Q2T42_RS12160 (Q2T42_12145) hmpF 2652376..2654082 (+) 1707 WP_316428799.1 pilus motility taxis protein HmpF -
  Q2T42_RS12165 (Q2T42_12150) tilS 2654199..2655170 (-) 972 WP_316428800.1 tRNA lysidine(34) synthetase TilS -
  Q2T42_RS12170 (Q2T42_12155) - 2655328..2655546 (+) 219 WP_026148973.1 DUF433 domain-containing protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13408.58 Da        Isoelectric Point: 5.1869

>NTDB_id=857350 Q2T42_RS12150 WP_017290869.1 2650430..2650795(-) (pilH) [Leptolyngbya boryana CZ1]
MSTVLVVEDSVTQREMITDLLKGSGIEVTIATDGVEALEHIQGHCPDLVVLDIVMPRMNGYEVCRRLKADPKTQKVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=857350 Q2T42_RS12150 WP_017290869.1 2650430..2650795(-) (pilH) [Leptolyngbya boryana CZ1]
ATGAGTACAGTTTTAGTCGTGGAAGATAGTGTCACCCAAAGAGAGATGATCACTGATCTGCTTAAGGGAAGTGGCATTGA
GGTGACGATCGCGACCGATGGCGTTGAAGCCTTGGAACACATTCAAGGGCATTGTCCTGATCTTGTGGTTTTGGATATTG
TCATGCCTCGAATGAATGGCTATGAGGTTTGCCGTCGGCTCAAAGCCGATCCCAAAACTCAGAAAGTGCCAGTCGTGATG
TGTTCGTCCAAAGGAGAAGAGTTCGATCGCTATTGGGGCATGAAGCAGGGGGCAGATGCCTATATTGCTAAGCCCTTTCA
GCCCACTGAACTCGTCGGTACAGTCAAACAATTGTTGCGCGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  vicR Streptococcus mutans UA159

37.5

99.174

0.372
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372