Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   Q2T42_RS12140 Genome accession   NZ_CP130144
Coordinates   2646993..2649632 (-) Length   879 a.a.
NCBI ID   WP_287455757.1    Uniprot ID   -
Organism   Leptolyngbya boryana CZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2641993..2654632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T42_RS12140 (Q2T42_12125) pilJ 2646993..2649632 (-) 2640 WP_287455757.1 methyl-accepting chemotaxis protein Machinery gene
  Q2T42_RS12145 (Q2T42_12130) - 2649888..2650418 (-) 531 WP_017290868.1 chemotaxis protein CheW -
  Q2T42_RS12150 (Q2T42_12135) pilH 2650430..2650795 (-) 366 WP_017290869.1 response regulator transcription factor Machinery gene
  Q2T42_RS12155 (Q2T42_12140) - 2650924..2652156 (-) 1233 WP_190648439.1 response regulator -
  Q2T42_RS12160 (Q2T42_12145) hmpF 2652376..2654082 (+) 1707 WP_316428799.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 879 a.a.        Molecular weight: 94259.05 Da        Isoelectric Point: 3.9936

>NTDB_id=857349 Q2T42_RS12140 WP_287455757.1 2646993..2649632(-) (pilJ) [Leptolyngbya boryana CZ1]
MARGNEFAQEYQQAERAYMQGKYEEAAGIVDRLVDNYPQDPSARLLRGHIYCYGLQKYDVAQEQYQSVLDLTSDPEFVDY
ANSGLAYAGQFSDSSADSFADTSLETDYSGFDESAYLSQESANSLDDFAFDDDFKATTEESSSFGNPFGAQHNGDGSKVG
ASIGLDDPFAVSASSDAPFSMQDESVVGQDFSNALDDFDQVFASDDEPSHGSMSTVSTDPGMSQGDMAVPISRVTSRDTS
EETLFMAAPGFYDEQAAAAFEMPTEQNKFAPIYDEPQNGSRNHPVSTPGNQSNVDFLDDFEDFDDLGNLSDFDLSEDSAG
FTSPSIGSAFGFNSNMSAASDSAEVDFGQGSDFAPSNRDGSAFQDDELFSMSSTTEQVPSFTTQLDVPSSEPTPTVEQGW
LAPLENASFATKQLIAAGAAGIVSAVAVAVVSFVASNQAAQNNNGAVVSQLRTTGIVMALASGVCGGGAAFAVGQMTARH
MKRSTDDLKAQFDSVCQGNLQARATVFAEDELGQLSTNFNQMTRVILTTTSEAQRKAEEQEQAKEDLQRQVIRLLDDVEG
AARGDLTVQAEVTADVLGAVADSFNLTIQNLREIVQQVKQAARQVSKGSTENEMFARSLSSDALRQAEELAVTLNSVQVM
TNSIQRVAESAREAEEVARTASSTALKGGEAVERTVAGILEIRETVAETTRKVKRLAESSQEISKIVALISQIASRTNLL
ALNASIEAARAGEAGRGFAIVADEVRQLADRAAKASKEIEQIVLQIQGETGSVMTAMEEGTQQVIEGTRLAEQAKRSLED
IIQVSSVIDTLVRSITADTVEQTETSRNVAQVMQSVELTAQETSQEAQRVSGSLQNLVGVARDLLTSVERFRVETVDRK

Nucleotide


Download         Length: 2640 bp        

>NTDB_id=857349 Q2T42_RS12140 WP_287455757.1 2646993..2649632(-) (pilJ) [Leptolyngbya boryana CZ1]
ATGGCACGAGGAAATGAATTCGCTCAAGAATATCAGCAGGCAGAGCGCGCCTATATGCAGGGCAAGTATGAAGAAGCGGC
TGGCATCGTCGATCGCTTAGTTGATAATTATCCTCAAGATCCTAGTGCTCGACTCTTACGGGGTCACATCTACTGCTATG
GCTTACAAAAGTATGATGTGGCGCAAGAGCAATACCAGTCTGTTCTCGATCTCACCTCTGATCCAGAATTTGTTGATTAC
GCGAATAGTGGTCTGGCTTATGCGGGTCAATTTTCAGATAGCTCTGCCGATAGCTTTGCAGATACCAGTCTAGAAACAGA
TTATTCAGGATTTGACGAATCTGCTTATCTATCACAAGAATCTGCAAATTCACTGGATGACTTCGCATTCGATGACGATT
TCAAAGCAACTACAGAAGAATCGTCGTCTTTTGGAAATCCCTTTGGCGCACAGCACAACGGTGATGGTTCAAAAGTTGGA
GCTTCGATCGGGTTAGATGATCCGTTTGCAGTTTCAGCTTCATCGGATGCGCCGTTCTCAATGCAGGACGAATCCGTAGT
GGGCCAAGACTTCTCGAATGCACTGGATGATTTTGATCAAGTCTTTGCCTCAGATGATGAGCCTTCGCACGGCAGCATGT
CTACAGTTTCAACTGATCCAGGCATGTCCCAGGGAGACATGGCTGTTCCAATCAGTCGCGTTACAAGTCGGGATACCAGT
GAAGAAACTTTGTTTATGGCGGCTCCGGGCTTCTATGATGAGCAAGCTGCAGCTGCATTCGAGATGCCAACTGAGCAGAA
CAAATTTGCGCCGATCTACGATGAGCCGCAAAACGGCAGTCGAAATCATCCGGTCTCAACGCCAGGCAATCAAAGCAATG
TTGATTTCCTAGACGATTTTGAAGACTTTGATGATCTGGGAAATCTTTCAGATTTTGATCTATCTGAGGATTCAGCCGGA
TTTACCAGTCCTTCGATTGGAAGTGCGTTTGGATTCAATTCAAATATGTCCGCTGCTTCGGACAGCGCTGAAGTTGATTT
TGGGCAAGGTTCGGATTTTGCACCTTCTAATAGAGATGGTTCAGCCTTCCAGGATGATGAACTTTTCAGCATGTCCAGCA
CAACTGAACAGGTCCCAAGTTTTACGACTCAATTAGATGTTCCAAGTTCAGAACCGACTCCGACTGTTGAACAAGGTTGG
TTAGCTCCACTTGAGAATGCTTCATTCGCAACTAAGCAGTTGATTGCTGCTGGAGCTGCTGGGATTGTCTCAGCAGTAGC
GGTTGCAGTGGTTAGCTTTGTCGCTTCCAATCAGGCGGCTCAAAACAATAATGGAGCTGTTGTTTCTCAGCTGCGCACAA
CTGGGATTGTGATGGCTCTGGCGAGTGGTGTTTGCGGTGGTGGTGCAGCATTTGCGGTCGGTCAAATGACTGCTCGGCAT
ATGAAGCGATCGACCGATGACCTCAAAGCCCAATTTGATTCGGTCTGTCAGGGCAATCTTCAAGCACGGGCTACTGTTTT
TGCAGAAGATGAGCTTGGTCAACTCTCGACCAACTTTAACCAAATGACTCGTGTGATTCTGACTACGACCAGCGAGGCGC
AACGTAAGGCAGAAGAACAAGAGCAAGCGAAAGAAGATTTACAGCGCCAGGTGATTCGCTTACTCGATGATGTAGAAGGT
GCGGCTCGCGGTGATTTGACGGTACAAGCAGAGGTTACTGCTGACGTCCTTGGAGCGGTTGCTGACTCATTCAACTTAAC
CATTCAGAACCTGCGTGAAATCGTTCAACAGGTAAAACAAGCTGCACGTCAGGTCAGTAAGGGTTCCACGGAAAATGAGA
TGTTCGCTCGCAGTTTGTCTTCTGACGCATTGCGTCAAGCTGAAGAACTCGCGGTAACCCTGAACTCTGTACAGGTGATG
ACCAACTCAATTCAGCGTGTAGCAGAGAGCGCTCGTGAAGCCGAAGAAGTCGCAAGAACTGCGTCTTCGACTGCCTTGAA
GGGCGGTGAAGCGGTAGAACGTACTGTGGCTGGTATTCTCGAAATTCGAGAAACAGTGGCAGAAACGACGCGTAAAGTTA
AACGACTCGCGGAATCTTCGCAAGAGATTTCTAAGATTGTTGCCTTAATTTCGCAGATTGCGTCTCGAACCAATCTTCTT
GCATTGAACGCCAGTATTGAGGCAGCAAGAGCAGGAGAAGCAGGACGAGGATTTGCAATCGTTGCAGATGAAGTTCGACA
GTTAGCAGACCGAGCCGCAAAAGCGTCGAAAGAGATTGAACAAATCGTATTACAGATTCAAGGTGAAACTGGATCAGTAA
TGACCGCGATGGAAGAAGGAACTCAACAAGTTATCGAGGGAACCCGGCTCGCTGAACAAGCGAAGCGCTCACTCGAAGAC
ATTATTCAAGTATCGAGCGTCATTGACACACTTGTGAGATCAATTACCGCCGATACGGTTGAGCAGACCGAAACTTCACG
GAACGTCGCTCAAGTGATGCAATCCGTGGAATTGACTGCACAAGAGACTTCGCAAGAAGCTCAACGCGTGTCAGGGTCAC
TGCAAAACCTAGTAGGGGTTGCGCGTGACTTGCTAACGTCGGTAGAACGATTCCGGGTAGAAACTGTTGATCGGAAGTAA

Domains

Predicted by InterProScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(656-836)

HAMP domain (HAMP)

(477-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

46.302

100

0.491