Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STYK_RS01620 Genome accession   NZ_AP024523
Coordinates   308090..310069 (+) Length   659 a.a.
NCBI ID   WP_261805117.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 303090..315069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS01590 - 303450..303680 (+) 231 WP_063612229.1 DUF1146 family protein -
  STYK_RS01595 (STYK_02810) murA 303704..304987 (+) 1284 WP_261805115.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  STYK_RS01600 (STYK_02820) - 304980..305168 (+) 189 WP_033684807.1 DNA-directed RNA polymerase subunit beta -
  STYK_RS01605 (STYK_02830) endA 305207..306031 (+) 825 WP_261038737.1 DNA-entry nuclease EndA Machinery gene
  STYK_RS01610 (STYK_02840) - 306186..307517 (+) 1332 WP_261805116.1 hemolysin family protein -
  STYK_RS01620 (STYK_02850) amiA 308090..310069 (+) 1980 WP_261805117.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS01625 (STYK_02860) amiC 310136..311632 (+) 1497 WP_261805118.1 ABC transporter permease Regulator
  STYK_RS01630 (STYK_02870) amiD 311632..312558 (+) 927 WP_004255894.1 oligopeptide ABC transporter permease OppC Regulator
  STYK_RS01635 (STYK_02880) amiE 312567..313634 (+) 1068 WP_084927004.1 ABC transporter ATP-binding protein Regulator
  STYK_RS01640 (STYK_02890) amiF 313645..314571 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73005.18 Da        Isoelectric Point: 4.9197

>NTDB_id=85723 STYK_RS01620 WP_261805117.1 308090..310069(+) (amiA) [Streptococcus toyakuensis strain TP1632]
MKKSRVFVAAGIALLATGVLVACGNSKSSDSTAPKAYGYVYSADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLTGNSKDFSTV
GIKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDTVTLAYFDGSDQESLERNFTSGAYSFARLYPTSSNFSKVEESYKDNIFYTPSGAGVGGLGVNIDRQNYKYTS
KTTDDEKTSTKKALLNKDFRQALNFAFDRTAYSAQVNGKEGAPLAVRNLFVKPDFVSAGEKTFGDLVAEKVTTYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTSKNYIARIQSFKQSVEKVLGEANVVVDIQQISKDE
FFNVTYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSEQTKTYMGYDDPSNAATAKVGMKDYDKLLDEAGKETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFSASYSQSGDKASDVYFKYVQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELTKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=85723 STYK_RS01620 WP_261805117.1 308090..310069(+) (amiA) [Streptococcus toyakuensis strain TP1632]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAATTGCTTTATTAGCAACAGGTGTGTTAGTTGCTTGTGGAAATTCGAA
ATCATCTGATTCGACAGCTCCAAAAGCCTACGGCTATGTTTATTCAGCTGATCCAGAAACATTGGACTATCTTATCTCTG
GAAAACAGAGTACGAAAGTGGCTACTTCAAACGGAATCGATGGCCTCTTTACAAATGACAAATATGGGAACTTGACTCCT
GCGGTTGCAGAAGACTGGTCTGTATCAAAAGATGGATTGACTTATACCTACAAAATTCGTAAAGGTGTAAAATGGATGAC
ATCTGATGGCGAAGAATATGCTGAAGTGACTGCTAAAGATTTCGTGAATGGATTGAAACATGCGGCAGATAAAAAATCAG
AAGCGCTTTACCTAGCTGAAACTTCTGTTAAGGGTCTATCTGACTATTTGACAGGTAATTCAAAAGATTTCTCTACAGTA
GGTATTAAAGCGGTTGATGATTATACTCTTGAGTATACTTTGAATCAACCAGAACCATACTGGAATTCTAAGATGGCTTA
CTCAATTTTCTGGCCGTTAAACGAAGAATTTGAAAAATCAAAAGGTTCTGATTTTGCTAAAGCAACAGATCCTACATCCT
TACTTTATAACGGACCTTTCTTGCTTAAAGGTTTGACTGCTAAATCTTCTATCGAATTTGCTAAGAATGAGCAGTACTGG
GATAAAGAGAATGTTCATTTAGATACAGTCACACTTGCATACTTTGATGGTTCAGACCAAGAATCACTTGAACGTAATTT
TACAAGTGGAGCTTATAGTTTTGCTCGTCTTTACCCAACAAGTTCAAACTTCTCAAAAGTAGAGGAGTCATACAAGGATA
ATATTTTCTACACTCCATCAGGAGCTGGTGTCGGAGGTTTAGGTGTAAATATCGATCGTCAAAATTACAAATATACCTCT
AAAACAACAGATGATGAGAAAACATCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGCCAAGCCTTGAACTTTGCCTT
TGATCGTACAGCTTATTCTGCTCAAGTTAACGGTAAAGAAGGTGCTCCTCTAGCAGTTCGTAACCTATTTGTGAAACCGG
ACTTTGTTTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTTGCTGAAAAAGTTACGACTTATGGAGACGAGTGGAAAAAT
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTTAATGCTGACAAAGCTAAAGCAGAATTTGCTAAAGCTAAAACTGCTCT
GGAAGCAGAAGGTGTGAAATTCCCTATCCATTTGGATGTTCCAGTAGACCAAACGTCTAAAAACTATATTGCACGTATTC
AGTCGTTCAAACAATCAGTTGAAAAAGTTTTAGGCGAAGCAAATGTTGTCGTCGATATTCAACAAATTTCTAAAGATGAA
TTCTTTAATGTGACTTATTATGCTGCTAATGCGGCGGCTGAGGATTGGGATCTTTCAGGTGCTGTTGGATGGAATCCTGA
CTATGAAGATCCATCAACTTATCTTGACATCCTTAAATCAACTAATAGTGAGCAAACGAAAACTTATATGGGCTATGATG
ACCCATCAAATGCAGCTACAGCAAAAGTTGGTATGAAAGATTACGATAAATTGCTTGATGAAGCTGGAAAAGAAACAAGT
GATCTTAACAAGCGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACAGACAGCTCACTCTTCTTACCAGCTATGTC
TTCTAGTGGTGCTGCACCATTTATTTCTCGTGTTGTACCATTCTCAGCTTCTTATAGCCAATCTGGAGATAAAGCTTCAG
ATGTCTACTTCAAATATGTTCAGTTACAAGATAAGGTTGTAACAAAGGCTGATTATGAACAAGCTCGTGAGAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGACTAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.678

100

0.677
  amiA3 Streptococcus thermophilus LMG 18311

67.121

100

0.672
  amiA3 Streptococcus thermophilus LMD-9

67.121

100

0.672

Multiple sequence alignment