Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STYK_RS01625 Genome accession   NZ_AP024523
Coordinates   310136..311632 (+) Length   498 a.a.
NCBI ID   WP_261805118.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 305136..316632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS01605 (STYK_02830) endA 305207..306031 (+) 825 WP_261038737.1 DNA-entry nuclease EndA Machinery gene
  STYK_RS01610 (STYK_02840) - 306186..307517 (+) 1332 WP_261805116.1 hemolysin family protein -
  STYK_RS01620 (STYK_02850) amiA 308090..310069 (+) 1980 WP_261805117.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS01625 (STYK_02860) amiC 310136..311632 (+) 1497 WP_261805118.1 ABC transporter permease Regulator
  STYK_RS01630 (STYK_02870) amiD 311632..312558 (+) 927 WP_004255894.1 oligopeptide ABC transporter permease OppC Regulator
  STYK_RS01635 (STYK_02880) amiE 312567..313634 (+) 1068 WP_084927004.1 ABC transporter ATP-binding protein Regulator
  STYK_RS01640 (STYK_02890) amiF 313645..314571 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  STYK_RS01645 (STYK_02900) - 315132..316109 (+) 978 WP_000869840.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55615.06 Da        Isoelectric Point: 9.4257

>NTDB_id=85724 STYK_RS01625 WP_261805118.1 310136..311632(+) (amiC) [Streptococcus toyakuensis strain TP1632]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
KLDSSVTVDANDSNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNVNLGDSYPTYANTPVLQVITQGQGQTKTGQVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKNDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=85724 STYK_RS01625 WP_261805118.1 310136..311632(+) (amiC) [Streptococcus toyakuensis strain TP1632]
ATGAAGAAATATATTTTTATGCGTGTCTTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACTTTAACCTACACGATTAT
CTATACGATGGTACCTCGTAAATTGATTTTTAAACAGGATACCAACTATAATAAGATTGCAACTACTCCAGATAAACGAG
ATAACTATGAAAATACTGTTTATGAGCGTATGGGCTATATCGAGTATTACGATACCAAGGAGCTGCAAGAAAAAGCTAGT
AAATTAGACTCATCGGTAACAGTTGATGCTAATGATAGCAATAAAGCGATTTATGAAAAATACATTAATCAATTAGGTAA
TGGTTGGACACTAGGTGTATTTTCAGAGAGTGGTCAGTTCTATGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTATGCTAACTTGCTTGATATTGATCATACAAACAAGATACAAGACCCTGAAAATCCAAACTTAGAACGCTATCTT
CGCTTTGAAAATGACCCTGCTATTGGATGGTCGTTGGTTGGTTCAGGTACAAAACATAAGTATCTGTTGTATTTTAACAA
CCAATTCCCATTTGTACACCAAAACTTTGTGAATGTTAATTTAGGTGATTCTTACCCAACTTATGCAAACACTCCCGTAC
TTCAAGTCATTACACAAGGTCAAGGACAAACAAAGACTGGACAAGTTCAATTCCCTACTGGTAAGAAGACTTCATCTGTA
GATATTTACTCACGTACTTATAAATCACCTAGTCAGGCAGACGCTCGTGAGGTAGCCAACTATGGTAAAAATGATCCGTA
TACAGCTACAGAGAGCAACTATCAGTATCCATCAATGATTGCAAGCTCTGCTGTTGCTGGATTAATTGGTTTGATTATTT
CGTATGCTATTGCAATCCCTCTTGGGTCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCTTTGGTTTATATTGTTCGTTTGATTGGATCATCTATTGGTCTTCCAGA
TTCGTTCCCTATCTTGGGTGCTGGAGATTGGCGTTCTTATGTCTTGCCAGCAGTTATTCTAGGGTTGCTAGGAGCACCAA
GTACAGCTATCTGGATTCGTCGTTACATGATTGATTTGCAATCTCAAGACTTCGTTCGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACATATCTTTAAAAACGCAATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTTAT
CGGAGTTATCGGTGGTGCAACTCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTAGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

77.108

100

0.771
  amiC Streptococcus thermophilus LMD-9

76.908

100

0.769
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767

Multiple sequence alignment