Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE78_RS05450 Genome accession   NZ_AP027424
Coordinates   1124113..1124628 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain B27 isolate B27     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1119113..1129628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE78_RS05405 (MUTS8_10400) csrA 1119700..1119885 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  QUE78_RS05435 (MUTS8_10410) yqaB 1121343..1121909 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE78_RS05440 (MUTS8_10420) yqaA 1121906..1122334 (+) 429 WP_001287454.1 YqaA family protein -
  QUE78_RS05445 (MUTS8_10430) gshA 1122407..1123963 (+) 1557 WP_000611812.1 glutamate--cysteine ligase -
  QUE78_RS05450 (MUTS8_10440) luxS 1124113..1124628 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUE78_RS05455 (MUTS8_10450) emrB 1124692..1126230 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE78_RS05460 (MUTS8_10460) emrA 1126247..1127419 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE78_RS05465 (MUTS8_10470) emrR 1127546..1128076 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUE78_RS05470 (MUTS8_10480) ygaH 1128167..1128502 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QUE78_RS05475 (MUTS8_10490) ygaZ 1128492..1129229 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=85724 QUE78_RS05450 WP_001130211.1 1124113..1124628(+) (luxS) [Escherichia coli strain B27 isolate B27]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=85724 QUE78_RS05450 WP_001130211.1 1124113..1124628(+) (luxS) [Escherichia coli strain B27 isolate B27]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment