Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   STYK_RS01635 Genome accession   NZ_AP024523
Coordinates   312567..313634 (+) Length   355 a.a.
NCBI ID   WP_084927004.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 307567..318634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS01620 (STYK_02850) amiA 308090..310069 (+) 1980 WP_261805117.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS01625 (STYK_02860) amiC 310136..311632 (+) 1497 WP_261805118.1 ABC transporter permease Regulator
  STYK_RS01630 (STYK_02870) amiD 311632..312558 (+) 927 WP_004255894.1 oligopeptide ABC transporter permease OppC Regulator
  STYK_RS01635 (STYK_02880) amiE 312567..313634 (+) 1068 WP_084927004.1 ABC transporter ATP-binding protein Regulator
  STYK_RS01640 (STYK_02890) amiF 313645..314571 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  STYK_RS01645 (STYK_02900) - 315132..316109 (+) 978 WP_000869840.1 ABC transporter substrate-binding protein -
  STYK_RS01650 (STYK_02910) - 316121..317014 (+) 894 WP_023947094.1 ABC transporter permease -
  STYK_RS01655 (STYK_02920) - 317027..317830 (+) 804 WP_000157668.1 ABC transporter ATP-binding protein -
  STYK_RS01660 (STYK_02930) treR 317863..318573 (-) 711 WP_227325707.1 trehalose operon repressor Regulator

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39461.04 Da        Isoelectric Point: 4.8078

>NTDB_id=85726 STYK_RS01635 WP_084927004.1 312567..313634(+) (amiE) [Streptococcus toyakuensis strain TP1632]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGGIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFDEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=85726 STYK_RS01635 WP_084927004.1 312567..313634(+) (amiE) [Streptococcus toyakuensis strain TP1632]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTTGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGAAAATCTGTTT
TGACAAAGACTTTCACAGGTATGCTTGAAGAAAATGGTCGCATTGCCCAAGGTGGCATTGACTACCGTGGTCAAGATTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGCGCTAAGATTGCGACTATCTTCCAAGATCCAATGACTAG
TTTGGACCCAATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGGATTCCAGATGCAGATAGACGTTTTGATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCGATTGCTCTTGCCTGCCGACCTGATGTCTTGATTTGTGATGAGCCAAC
GACTGCCTTGGATGTGACCATCCAAGCTCAGATTATTGATTTGTTGAAATCTTTACAAAACGAGTACCATTTCACAACAA
TCTTTATCACCCACGACCTTGGTGTGGTGGCAAGTATTGCAGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACTGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCCTTTGCCT
TGCGTTCTGACTATGCAATGCAAATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTACTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTTCATGATAAGATTCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.606

100

0.876

  amiE Streptococcus thermophilus LMG 18311

85.915

100

0.859

  amiE Streptococcus thermophilus LMD-9

85.915

100

0.859

  oppD Streptococcus mutans UA159

54.261

99.155

0.538


Multiple sequence alignment