Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   STYK_RS01630 Genome accession   NZ_AP024523
Coordinates   311632..312558 (+) Length   308 a.a.
NCBI ID   WP_004255894.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 306632..317558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS01620 (STYK_02850) amiA 308090..310069 (+) 1980 WP_261805117.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS01625 (STYK_02860) amiC 310136..311632 (+) 1497 WP_261805118.1 ABC transporter permease Regulator
  STYK_RS01630 (STYK_02870) amiD 311632..312558 (+) 927 WP_004255894.1 oligopeptide ABC transporter permease OppC Regulator
  STYK_RS01635 (STYK_02880) amiE 312567..313634 (+) 1068 WP_084927004.1 ABC transporter ATP-binding protein Regulator
  STYK_RS01640 (STYK_02890) amiF 313645..314571 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  STYK_RS01645 (STYK_02900) - 315132..316109 (+) 978 WP_000869840.1 ABC transporter substrate-binding protein -
  STYK_RS01650 (STYK_02910) - 316121..317014 (+) 894 WP_023947094.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34547.47 Da        Isoelectric Point: 9.6485

>NTDB_id=85725 STYK_RS01630 WP_004255894.1 311632..312558(+) (amiD) [Streptococcus toyakuensis strain TP1632]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYSIRIQIMRYRDLEYNLASRTLGTPTFKIVVKNIMPQLVSVIVTTTSQMLPAFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=85725 STYK_RS01630 WP_004255894.1 311632..312558(+) (amiD) [Streptococcus toyakuensis strain TP1632]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCCTA
TTCATACTGGGGCTCAGTGTTTAGACAATTTATGAAGAAGAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAAGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGTGTGATGATGGAAGTTTATAATGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCTATGAGTGTGACTACTTGGATTGGTATTGCTTACTC
AATTCGTATTCAGATCATGCGTTATCGTGACTTGGAGTATAACCTTGCTTCACGTACACTTGGAACACCAACCTTTAAGA
TTGTTGTAAAAAACATTATGCCACAATTGGTATCTGTTATCGTTACGACGACATCTCAAATGCTTCCAGCCTTTATCTCA
TACGAAGCTTTCCTTTCATTCTTTGGACTTGGATTGCCGATTACAGTTCCAAGTTTAGGTCGTTTGATTTCAGATTACTC
TCAGAACGTAACGACAAATGCATACCTCTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTATCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

84.416

100

0.844
  amiD Streptococcus thermophilus LMG 18311

82.792

100

0.828
  amiD Streptococcus thermophilus LMD-9

82.792

100

0.828

Multiple sequence alignment