Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   STYK_RS01660 Genome accession   NZ_AP024523
Coordinates   317863..318573 (-) Length   236 a.a.
NCBI ID   WP_227325707.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 312863..323573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS01640 (STYK_02890) amiF 313645..314571 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  STYK_RS01645 (STYK_02900) - 315132..316109 (+) 978 WP_000869840.1 ABC transporter substrate-binding protein -
  STYK_RS01650 (STYK_02910) - 316121..317014 (+) 894 WP_023947094.1 ABC transporter permease -
  STYK_RS01655 (STYK_02920) - 317027..317830 (+) 804 WP_000157668.1 ABC transporter ATP-binding protein -
  STYK_RS01660 (STYK_02930) treR 317863..318573 (-) 711 WP_227325707.1 trehalose operon repressor Regulator
  STYK_RS01665 (STYK_02940) treP 318758..320725 (+) 1968 WP_223330200.1 PTS system trehalose-specific EIIBC component -
  STYK_RS01670 (STYK_02950) treC 320789..322414 (+) 1626 WP_261805119.1 alpha,alpha-phosphotrehalase -
  STYK_RS01675 (STYK_02960) - 322556..322804 (+) 249 WP_076984790.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27819.99 Da        Isoelectric Point: 8.9756

>NTDB_id=85728 STYK_RS01660 WP_227325707.1 317863..318573(-) (treR) [Streptococcus toyakuensis strain TP1632]
MKKYQRLFKQIQETIQNETYAVGEFLPSEHDLMNQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVQELRLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNITRQIAEQSIY
SYIEDDLKLLIDYAQKEITIDHSNDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=85728 STYK_RS01660 WP_227325707.1 317863..318573(-) (treR) [Streptococcus toyakuensis strain TP1632]
ATGAAGAAATACCAACGATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGAGTTCCTTCC
TAGTGAGCACGACCTTATGAACCAGTATCAGGTAAGCCGTGATACCGTCCGAAAAGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACTGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTCAAGAACTTAGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTAATAACTGGCTTCCCAGAGTTTCGTATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATATCACTCGCCAAATTGCTGAGCAGTCCATCTAT
TCTTATATAGAGGACGACCTCAAACTCCTTATTGATTATGCTCAAAAGGAAATAACCATTGACCACTCAAATGACAGAGA
CAAGATTCTCATGGACATAGGCAAAGACCCTTATGTCGTTTCAATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TTCAGTTTACTGAAAGCCGCCATAAACTCGAAAAATTCAGATTTGTAGATTTTGCAAAACGTAAGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

57.627

100

0.576

Multiple sequence alignment