Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   STYK_RS01605 Genome accession   NZ_AP024523
Coordinates   305207..306031 (+) Length   274 a.a.
NCBI ID   WP_261038737.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 300207..311031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS01570 (STYK_02770) asnA 300297..301289 (+) 993 WP_173274827.1 aspartate--ammonia ligase -
  STYK_RS01575 (STYK_02780) rsmD 301354..301893 (+) 540 WP_000706959.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  STYK_RS01580 (STYK_02790) coaD 301883..302371 (+) 489 WP_261805114.1 pantetheine-phosphate adenylyltransferase -
  STYK_RS01585 (STYK_02800) sepM 302355..303392 (+) 1038 WP_000727281.1 SepM family pheromone-processing serine protease Regulator
  STYK_RS01590 - 303450..303680 (+) 231 WP_063612229.1 DUF1146 family protein -
  STYK_RS01595 (STYK_02810) murA 303704..304987 (+) 1284 WP_261805115.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  STYK_RS01600 (STYK_02820) - 304980..305168 (+) 189 WP_033684807.1 DNA-directed RNA polymerase subunit beta -
  STYK_RS01605 (STYK_02830) endA 305207..306031 (+) 825 WP_261038737.1 DNA-entry nuclease EndA Machinery gene
  STYK_RS01610 (STYK_02840) - 306186..307517 (+) 1332 WP_261805116.1 hemolysin family protein -
  STYK_RS01620 (STYK_02850) amiA 308090..310069 (+) 1980 WP_261805117.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 29852.45 Da        Isoelectric Point: 9.8711

>NTDB_id=85722 STYK_RS01605 WP_261038737.1 305207..306031(+) (endA) [Streptococcus toyakuensis strain TP1632]
MDKKTRQTLIGLLVLLLLSAGSYYIKQMQSTANSPKTKLSQKNQASEAPSQALAESVLTDAVKSQVKGSLEWNGSGAFIV
NGNKTNLDAKVSSKPYADNKTKTVGKETVPTVANALLSKATRQYKNREETGNGSTSWTPPGWHQVKNLKGTYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEDSTGQNYYESMVRKALDKNKRVRYRVTLYYASNEDLVPSASQIE
AKSSDGELEFNVLVPNVQKGLQLDYRTGEVTVTQ

Nucleotide


Download         Length: 825 bp        

>NTDB_id=85722 STYK_RS01605 WP_261038737.1 305207..306031(+) (endA) [Streptococcus toyakuensis strain TP1632]
ATGGATAAAAAAACAAGACAGACACTAATCGGACTGCTAGTGTTATTGCTTTTGTCTGCAGGGAGCTATTATATCAAGCA
GATGCAGTCGACAGCTAATAGTCCCAAAACCAAGCTTAGTCAGAAAAACCAAGCGTCTGAAGCTCCTAGTCAAGCATTGG
CAGAGAGTGTCTTAACAGACGCAGTCAAGAGTCAAGTAAAAGGGAGTCTGGAGTGGAATGGCTCAGGTGCTTTTATCGTC
AATGGTAATAAAACAAATCTAGATGCTAAGGTTTCAAGTAAGCCCTACGCTGATAATAAAACAAAGACAGTGGGCAAGGA
AACGGTACCAACCGTAGCTAATGCGCTCTTGTCTAAGGCTACTCGCCAATACAAGAATCGTGAAGAAACTGGGAATGGTT
CGACTTCTTGGACTCCTCCAGGCTGGCATCAGGTTAAGAATCTAAAGGGTACTTATACCCATGCGGTCGATAGAGGTCAC
TTGTTAGGCTATGCCTTAATCGGTGGCTTGGATGGTTTTGATGCCTCGACAAGCAATCCTAAAAACATTGCTGTTCAAAC
AGCCTGGGCAAATCAGGCGCAAGCCGAGGATTCGACTGGTCAAAACTACTATGAAAGCATGGTACGTAAGGCCTTGGATA
AAAACAAGCGTGTCCGTTACCGTGTAACCCTTTACTACGCTTCGAATGAGGATTTAGTTCCTTCAGCTTCACAGATTGAA
GCCAAGTCTTCAGACGGAGAATTGGAATTTAATGTTCTAGTTCCCAATGTTCAAAAAGGACTTCAACTGGATTACCGAAC
TGGAGAAGTTACTGTTACTCAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(75-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

95.255

100

0.953
  endA Streptococcus pneumoniae D39

95.255

100

0.953
  endA Streptococcus pneumoniae R6

95.255

100

0.953
  endA Streptococcus pneumoniae TIGR4

95.255

100

0.953

Multiple sequence alignment