Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q0F95_RS00110 Genome accession   NZ_CP129881
Coordinates   24420..25790 (+) Length   456 a.a.
NCBI ID   WP_061840899.1    Uniprot ID   A0A2H6CRK9
Organism   Tetragenococcus halophilus strain H189     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19420..30790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0F95_RS00085 (Q0F95_00085) - 20028..20225 (-) 198 WP_014123414.1 hypothetical protein -
  Q0F95_RS00090 (Q0F95_00090) - 20406..21659 (-) 1254 WP_205626708.1 glutamate-5-semialdehyde dehydrogenase -
  Q0F95_RS00095 (Q0F95_00095) proB 21650..22456 (-) 807 WP_061840900.1 glutamate 5-kinase -
  Q0F95_RS00100 (Q0F95_00100) - 22801..23700 (-) 900 WP_014123417.1 aldo/keto reductase -
  Q0F95_RS00105 (Q0F95_00105) - 23896..24396 (+) 501 WP_094244079.1 dUTP diphosphatase -
  Q0F95_RS00110 (Q0F95_00110) radA 24420..25790 (+) 1371 WP_061840899.1 DNA repair protein RadA Machinery gene
  Q0F95_RS00115 (Q0F95_00115) - 25815..26951 (+) 1137 WP_103100115.1 PIN/TRAM domain-containing protein -
  Q0F95_RS00120 (Q0F95_00120) gltX 27078..28535 (+) 1458 WP_014123421.1 glutamate--tRNA ligase -
  Q0F95_RS00125 (Q0F95_00125) cysS 28792..30201 (+) 1410 WP_014123422.1 cysteine--tRNA ligase -
  Q0F95_RS00130 (Q0F95_00130) - 30198..30587 (+) 390 WP_014123423.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50077.63 Da        Isoelectric Point: 6.5285

>NTDB_id=856154 Q0F95_RS00110 WP_061840899.1 24420..25790(+) (radA) [Tetragenococcus halophilus strain H189]
MAKKVKTQFECQNCGYISPRYLGKCPNCGSWNSMVEEKLQDTTDRRNRTTLTGSKMQPTLLKDVVPKKEPRIKTSLDELN
RVLGGGVVPGSMILLGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESTEQIKLRAQRLGDAENDFYLFAETDMQDIRE
TIEKLQPDYVIIDSIQTMTQPDISSAAGSVSQVRETTAELLKIAKSNEIAVFVVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKYQSFRILRAVKNRFGSTNEIGIFEMYEQGLKEVSNPSQVFLEERLEGTSGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTATGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTKPTECFIGEIGLTG
EIRRVSAIEQRVKEVQKLGFEKVYIPKNNLSGWKAPADIEVVGIATLDEALKRIFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=856154 Q0F95_RS00110 WP_061840899.1 24420..25790(+) (radA) [Tetragenococcus halophilus strain H189]
ATGGCAAAAAAGGTAAAAACACAATTTGAATGTCAAAATTGCGGTTATATTTCACCTAGGTATCTAGGCAAATGTCCTAA
TTGTGGTAGTTGGAATTCGATGGTAGAAGAAAAACTACAAGACACTACCGATCGCAGGAATCGAACAACACTGACAGGTA
GCAAGATGCAGCCGACACTTTTAAAAGATGTTGTTCCTAAAAAAGAGCCACGAATAAAGACATCTCTAGATGAATTGAAT
CGTGTCTTAGGTGGAGGTGTGGTTCCAGGATCGATGATCCTATTAGGCGGGGATCCTGGTATTGGTAAGTCCACCTTGCT
TTTACAAGTATCGCAACAGTTAGCAGCAACCGGTGGAACAGTACTTTATGTCTCCGGAGAAGAAAGTACAGAACAAATCA
AATTACGAGCGCAGCGTTTAGGCGATGCCGAAAATGATTTTTATTTATTTGCTGAAACGGATATGCAGGATATTCGAGAA
ACAATTGAAAAGCTGCAACCCGATTATGTGATCATTGACTCCATTCAAACGATGACACAACCAGATATTTCAAGCGCGGC
CGGAAGTGTTAGCCAAGTTCGAGAAACTACGGCCGAGTTATTAAAAATCGCTAAATCAAACGAAATTGCCGTCTTTGTGG
TTGGCCATGTGACTAAAGAAGGTTCTATCGCTGGCCCTCGTATGCTAGAGCATATGGTTGATACAGTATTGTATTTTGAA
GGAGATAAGTACCAAAGTTTTCGTATTTTACGGGCAGTAAAAAACCGTTTTGGTTCGACTAATGAGATCGGCATTTTTGA
AATGTATGAACAAGGCCTCAAAGAAGTAAGTAATCCTTCACAAGTTTTTTTAGAAGAACGATTAGAAGGAACGAGCGGAT
CTGCCATTGTGGTTGCGATGGAAGGAACGCGTCCTATTCTAGTGGAAATACAAGCATTAGTTACACCAACGATGTTTGGA
AATGCTAAACGAACGGCTACTGGCTTAGATTTTAATCGAGTCTCCTTGATTATGGCTGTATTAGAAAAACGAGCAGGCCT
ACTTTTACAAAATCAGGATGCTTATTTAAAAGCAGCTGGTGGTGTAAAATTAAATGAACCAGCGATCGATCTAGCTATAG
CTATTAGTATTGCTTCAAGTTATAAAGAAAAAGGTACAAAACCTACTGAATGTTTCATTGGGGAAATTGGTCTTACAGGG
GAAATTCGTCGCGTGAGTGCTATTGAGCAGCGCGTAAAAGAGGTTCAAAAATTAGGTTTTGAGAAAGTGTATATACCAAA
AAATAATTTAAGCGGCTGGAAAGCGCCAGCTGACATCGAGGTTGTTGGTATCGCAACACTTGATGAAGCATTAAAACGTA
TATTTAGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H6CRK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

69.89

99.781

0.697
  radA Streptococcus mitis NCTC 12261

69.89

99.781

0.697
  radA Streptococcus pneumoniae Rx1

69.89

99.781

0.697
  radA Streptococcus pneumoniae D39

69.89

99.781

0.697
  radA Streptococcus pneumoniae R6

69.89

99.781

0.697
  radA Streptococcus pneumoniae TIGR4

69.89

99.781

0.697
  radA Bacillus subtilis subsp. subtilis str. 168

64.08

98.904

0.634