Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QZN14_RS07550 Genome accession   NZ_CP129875
Coordinates   1504718..1505308 (-) Length   196 a.a.
NCBI ID   WP_000613483.1    Uniprot ID   A0AAV3JHA0
Organism   Streptococcus agalactiae COH1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1495071..1518003 1504718..1505308 within 0


Gene organization within MGE regions


Location: 1495071..1518003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN14_RS07495 yabA 1495453..1495779 (-) 327 WP_000358198.1 DNA replication initiation control protein YabA -
  QZN14_RS07500 - 1495809..1496672 (-) 864 WP_000364562.1 DNA polymerase III subunit delta' -
  QZN14_RS07505 tmk 1496692..1497327 (-) 636 WP_000715592.1 dTMP kinase -
  QZN14_RS07510 - 1497536..1498702 (+) 1167 WP_000160598.1 IS30-like element ISSag9 family transposase -
  QZN14_RS07515 - 1498967..1499626 (-) 660 WP_001144245.1 CBS domain-containing protein -
  QZN14_RS07520 - 1499645..1500355 (-) 711 WP_000178147.1 ABC transporter ATP-binding protein -
  QZN14_RS07525 - 1500365..1501120 (-) 756 Protein_1404 ABC transporter ATP-binding protein -
  QZN14_RS07530 - 1501121..1502074 (-) 954 WP_000662328.1 branched-chain amino acid ABC transporter permease -
  QZN14_RS07535 - 1502077..1502946 (-) 870 WP_000941400.1 branched-chain amino acid ABC transporter permease -
  QZN14_RS07540 - 1503052..1504218 (-) 1167 WP_000415515.1 ABC transporter substrate-binding protein -
  QZN14_RS07545 - 1504373..1504618 (-) 246 WP_001041186.1 DUF2129 domain-containing protein -
  QZN14_RS07550 clpP 1504718..1505308 (-) 591 WP_000613483.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QZN14_RS07555 upp 1505433..1506062 (-) 630 WP_000514490.1 uracil phosphoribosyltransferase -
  QZN14_RS07560 - 1506172..1507341 (-) 1170 WP_000634083.1 MalY/PatB family protein -
  QZN14_RS07565 - 1507477..1508025 (-) 549 WP_001019793.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  QZN14_RS07570 - 1508198..1509550 (-) 1353 WP_000427463.1 APC family permease -
  QZN14_RS07575 trkA 1509756..1511105 (+) 1350 WP_001220335.1 Trk system potassium transporter TrkA -
  QZN14_RS07580 - 1511110..1512549 (+) 1440 WP_001043409.1 TrkH family potassium uptake protein -
  QZN14_RS07585 yidD 1512573..1512824 (-) 252 WP_000920196.1 membrane protein insertion efficiency factor YidD -
  QZN14_RS07590 - 1512824..1513546 (-) 723 WP_001222207.1 pseudouridine synthase -
  QZN14_RS07595 scpB 1513536..1514120 (-) 585 WP_000221690.1 SMC-Scp complex subunit ScpB -
  QZN14_RS07600 - 1514117..1514824 (-) 708 WP_000351869.1 segregation/condensation protein A -
  QZN14_RS07605 xerD 1514824..1515564 (-) 741 WP_000606411.1 site-specific tyrosine recombinase XerD -
  QZN14_RS07610 cbpB 1515554..1516027 (-) 474 WP_000560703.1 cyclic-di-AMP-binding protein CbpB -
  QZN14_RS07615 - 1516024..1516545 (-) 522 WP_001007721.1 metallophosphoesterase -
  QZN14_RS07620 - 1516527..1517501 (-) 975 WP_000167813.1 nucleoside-triphosphate diphosphatase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21550.52 Da        Isoelectric Point: 4.5933

>NTDB_id=856007 QZN14_RS07550 WP_000613483.1 1504718..1505308(-) (clpP) [Streptococcus agalactiae COH1]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQ
SIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=856007 QZN14_RS07550 WP_000613483.1 1504718..1505308(-) (clpP) [Streptococcus agalactiae COH1]
ATGATTCCAGTAGTTATTGAACAAACAAGTCGTGGTGAACGTTCTTATGATATTTACTCACGTCTTTTAAAAGATCGTAT
TATTATGTTGACAGGCCAAGTTGAGGATAATATGGCCAATAGTATCATTGCACAGTTATTGTTTCTCGATGCACAAGATA
ATACAAAGGATATTTACCTTTATGTCAATACACCAGGTGGTTCAGTATCGGCTGGACTTGCTATTGTGGACACCATGAAC
TTCATTAAATCGGACGTACAGACGATTGTTATGGGGATGGCTGCTTCGATGGGAACCATTATTGCTTCAAGTGGTGCTAA
AGGAAAACGTTTTATGTTACCGAATGCAGAATATATGATCCACCAACCAATGGGCGGAACAGGCGGAGGTACACAGCAAT
CTGATATGGCTATCGCTGCTGAGCATCTTTTAAAAACGCGTCATACTTTAGAAAAAATCTTAGCTGATAATTCTGGTCAA
TCTATTGAAAAAGTCCATGATGATGCAGAGCGTGATCGTTGGATGAGTGCTCAAGAAACACTTGATTATGGCTTTATTGA
TGCTATTATGGAAAATAATAATTTACAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

92.347

100

0.923
  clpP Streptococcus thermophilus LMD-9

92.347

100

0.923
  clpP Streptococcus pneumoniae Rx1

92.308

99.49

0.918
  clpP Streptococcus pneumoniae D39

92.308

99.49

0.918
  clpP Streptococcus pneumoniae R6

92.308

99.49

0.918
  clpP Streptococcus pneumoniae TIGR4

92.308

99.49

0.918
  clpP Streptococcus pyogenes JRS4

89.286

100

0.893
  clpP Streptococcus pyogenes MGAS315

89.286

100

0.893
  clpP Streptococcus mutans UA159

88.776

100

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.204

100

0.852
  clpP Lactococcus lactis subsp. cremoris KW2

84.694

100

0.847
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

96.939

0.561