Detailed information NTG0855120

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: V8690_RS05555
• Genome accession: NZ_CP146350
• Coordinates: 1178463..1179098 (+)
• Length: 211 a.a.
• NCBI ID: WP_338776193.1
• Uniprot ID: -
• Organism: Streptomyces sp. DG1A-41
• Function: degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1173463..1184098

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V8690_RS05525 (V8690_05525)	-	1173588..1173914 (-)	327	WP_338776187.1	hypothetical protein	-
V8690_RS05530 (V8690_05530)	-	1173916..1174395 (-)	480	WP_338776188.1	DUF6232 family protein	-
V8690_RS05535 (V8690_05535)	-	1174527..1175252 (-)	726	WP_338776189.1	WHG domain-containing protein	-
V8690_RS05540 (V8690_05540)	-	1175458..1176240 (-)	783	WP_338776190.1	hypothetical protein	-
V8690_RS05545 (V8690_05545)	-	1176902..1177969 (+)	1068	WP_338776191.1	tyrosine-type recombinase/integrase	-
V8690_RS05550 (V8690_05550)	-	1178085..1178372 (-)	288	WP_338776192.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
V8690_RS05555 (V8690_05555)	clpP	1178463..1179098 (+)	636	WP_338776193.1	ATP-dependent Clp protease proteolytic subunit	Regulator
V8690_RS05560 (V8690_05560)	-	1179106..1179414 (+)	309	WP_184981270.1	hypothetical protein	-
V8690_RS05565 (V8690_05565)	-	1179967..1180440 (+)	474	WP_338776194.1	C40 family peptidase	-
V8690_RS05570 (V8690_05570)	-	1180523..1181167 (+)	645	WP_338776195.1	DUF6328 family protein	-
V8690_RS05575 (V8690_05575)	-	1181103..1181741 (-)	639	WP_338776196.1	LysE family translocator	-
V8690_RS05580 (V8690_05580)	-	1181834..1182760 (+)	927	WP_338776197.1	LysR family transcriptional regulator	-
V8690_RS05585 (V8690_05585)	-	1182763..1183221 (-)	459	WP_338776198.1	ATP-binding protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 23182.37 Da
• Isoelectric Point: 5.6160

>NTDB_id=855120 V8690_RS05555 WP_338776193.1 1178463..1179098(+) (clpP) [Streptomyces sp. DG1A-41]
MTRPSARYVLPEFTERTSSGQRTMDPYSKLLEGRIVFLGAPVDETSANDVMAQFMYLEHQAPDRDISLYINPPGGTFHAL
TAIYDTMRYIACDVETVCLGQAGAAASVLLAAGTPGKRSVLPDARLVIHQPALPEPVHGQASDLAIQADELTRIRTRMEE
MLARHTGRTREQVSADIEREKVLTAQEAVEYGLVDRIVPHRKATLAPPTGE

Nucleotide

• Length: 636 bp

>NTDB_id=855120 V8690_RS05555 WP_338776193.1 1178463..1179098(+) (clpP) [Streptomyces sp. DG1A-41]
ATGACCCGACCGTCCGCCCGTTACGTGCTGCCCGAGTTCACCGAACGCACCTCGTCCGGGCAACGGACGATGGATCCGTA
CTCGAAGCTGCTGGAGGGGCGGATCGTCTTCCTCGGGGCGCCGGTGGACGAGACCTCGGCGAACGACGTGATGGCCCAGT
TCATGTACCTCGAACACCAGGCCCCCGACCGCGACATCTCGCTCTACATCAACCCCCCCGGCGGCACCTTCCACGCCTTG
ACGGCCATCTACGACACGATGCGGTACATCGCCTGTGACGTGGAGACGGTCTGCCTGGGCCAGGCCGGCGCGGCCGCCTC
GGTGCTGCTGGCTGCGGGCACGCCCGGCAAGCGATCCGTGCTGCCGGACGCCCGTCTGGTGATCCATCAGCCGGCGCTCC
CCGAGCCGGTCCACGGGCAGGCCAGCGATCTGGCGATCCAGGCCGACGAGTTGACCCGCATCCGGACCCGGATGGAGGAG
ATGCTCGCGCGACACACGGGCCGCACCCGGGAGCAGGTCAGCGCGGACATCGAACGCGAGAAGGTCCTCACCGCCCAGGA
GGCGGTGGAGTACGGGCTGGTGGACCGGATCGTCCCCCACCGCAAGGCCACCCTGGCCCCGCCGACCGGAGAGTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (19-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pneumoniae Rx1	41.451	91.469	0.379
clpP	Streptococcus pneumoniae D39	41.451	91.469	0.379
clpP	Streptococcus pneumoniae R6	41.451	91.469	0.379
clpP	Streptococcus pneumoniae TIGR4	41.451	91.469	0.379
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	42.328	89.573	0.379
clpP	Streptococcus pyogenes MGAS315	40.722	91.943	0.374
clpP	Streptococcus pyogenes JRS4	40.722	91.943	0.374
clpP	Bacillus subtilis subsp. subtilis str. 168	41.146	90.995	0.374
clpP	Lactococcus lactis subsp. cremoris KW2	40.206	91.943	0.37
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	40.206	91.943	0.37
clpP	Streptococcus thermophilus LMD-9	39.691	91.943	0.365
clpP	Streptococcus thermophilus LMG 18311	39.691	91.943	0.365
clpP	Streptococcus mutans UA159	39.175	91.943	0.36