Detailed information NTG0855112

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: V8690_RS01395
• Genome accession: NZ_CP146350
• Coordinates: 276005..276646 (+)
• Length: 213 a.a.
• NCBI ID: WP_338775467.1
• Uniprot ID: -
• Organism: Streptomyces sp. DG1A-41
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 271005..281646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V8690_RS01370 (V8690_01370)	-	271325..272122 (-)	798	WP_338775463.1	VOC family protein	-
V8690_RS01375 (V8690_01375)	-	272273..273280 (+)	1008	WP_338785202.1	zinc-binding alcohol dehydrogenase family protein	-
V8690_RS01380 (V8690_01380)	-	273387..274289 (+)	903	WP_338775464.1	SGNH/GDSL hydrolase family protein	-
V8690_RS01385 (V8690_01385)	-	274322..275197 (+)	876	WP_338775465.1	aminoglycoside phosphotransferase family protein	-
V8690_RS01390 (V8690_01390)	-	275235..275717 (-)	483	WP_338775466.1	VOC family protein	-
V8690_RS01395 (V8690_01395)	clpP	276005..276646 (+)	642	WP_338775467.1	ATP-dependent Clp protease proteolytic subunit	Regulator
V8690_RS01400 (V8690_01400)	-	276646..277248 (+)	603	WP_338775468.1	ATP-dependent Clp protease proteolytic subunit	-
V8690_RS01405 (V8690_01405)	-	277269..277706 (-)	438	WP_338775469.1	helix-turn-helix transcriptional regulator	-
V8690_RS01410 (V8690_01410)	-	277990..278877 (+)	888	WP_338775470.1	RNA polymerase sigma factor SigF	-
V8690_RS01415 (V8690_01415)	-	278996..279460 (-)	465	WP_338775471.1	ATP-binding protein	-
V8690_RS01420 (V8690_01420)	-	279683..280267 (+)	585	WP_338775472.1	PRC-barrel domain-containing protein	-
V8690_RS01425 (V8690_01425)	-	280264..280680 (+)	417	WP_338775473.1	PRC-barrel domain-containing protein	-

Sequence

Protein

• Length: 213 a.a.
• Molecular weight: 23298.41 Da
• Isoelectric Point: 5.0760

>NTDB_id=855112 V8690_RS01395 WP_338775467.1 276005..276646(+) (clpP) [Streptomyces sp. DG1A-41]
MTPLTTLTPRSEEGDTPPTRFDDHLAAQLLAQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDISLYINSPGGSVHAGL
AIYDTMRLIPNDVSTLAMGFAASMGQFLLCVGTPGKRYSLPNARVMMHQPSGGIGGTTADIEIQAQNLEFTKRTIERITA
EHTGQTPETISRDGDRDRWFTAEEAKEYGMVDRVLESLADIRPAATRRRMGLQ

Nucleotide

• Length: 642 bp

>NTDB_id=855112 V8690_RS01395 WP_338775467.1 276005..276646(+) (clpP) [Streptomyces sp. DG1A-41]
ATGACTCCACTCACGACACTCACCCCGCGGTCGGAGGAGGGCGACACCCCTCCGACCCGGTTCGACGACCATCTGGCCGC
CCAGCTGCTCGCGCAGCGCATCGTGCTGCTGGGCACGCAGGTCGACGAGGTCTCCGCGAACCGGGTCTGCGCCCAGCTGC
TGATCCTGTCCGCGGAGGACCCGCGCACCGACATCAGCCTGTACATCAACAGCCCCGGCGGCTCGGTGCACGCGGGCCTC
GCCATCTACGACACGATGCGGCTGATCCCCAACGACGTCTCCACCCTGGCCATGGGCTTCGCCGCCAGCATGGGCCAGTT
CCTGCTCTGCGTCGGCACGCCGGGCAAGCGCTACTCCCTGCCGAACGCGCGCGTCATGATGCACCAGCCGTCGGGGGGCA
TCGGCGGCACCACCGCCGACATCGAGATCCAGGCGCAGAACCTGGAGTTCACCAAGCGGACCATCGAGCGGATCACCGCC
GAGCACACCGGACAGACCCCGGAGACCATCTCCCGGGACGGCGACCGGGACCGCTGGTTCACGGCCGAGGAGGCCAAGGA
GTACGGCATGGTGGACCGGGTCCTGGAGTCCCTCGCGGACATCCGCCCGGCGGCCACCCGGCGCAGGATGGGGCTTCAGT
GA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (25-196)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	51.705	82.629	0.427
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.419	80.751	0.399
clpP	Streptococcus pneumoniae D39	47.399	81.221	0.385
clpP	Streptococcus pneumoniae R6	47.399	81.221	0.385
clpP	Streptococcus pneumoniae TIGR4	47.399	81.221	0.385
clpP	Streptococcus pneumoniae Rx1	47.399	81.221	0.385
clpP	Streptococcus pyogenes JRS4	46.857	82.16	0.385
clpP	Streptococcus pyogenes MGAS315	46.857	82.16	0.385
clpP	Lactococcus lactis subsp. cremoris KW2	46.286	82.16	0.38
clpP	Streptococcus thermophilus LMD-9	45.665	81.221	0.371
clpP	Streptococcus thermophilus LMG 18311	45.665	81.221	0.371
clpP	Streptococcus mutans UA159	45.143	82.16	0.371
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	45.143	82.16	0.371