Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | LLWG2_RS03205 | Genome accession | NZ_CP129660 |
| Coordinates | 624468..625067 (-) | Length | 199 a.a. |
| NCBI ID | WP_064305133.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain Wg2 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 624468..635746 | 624468..625067 | within | 0 |
Gene organization within MGE regions
Location: 624468..635746
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLWG2_RS03205 (LLWG2_03220) | clpP | 624468..625067 (-) | 600 | WP_064305133.1 | ATP-dependent Clp protease proteolytic subunit | Regulator |
| LLWG2_RS03210 (LLWG2_03225) | - | 625263..625745 (+) | 483 | WP_396420859.1 | hypothetical protein | - |
| LLWG2_RS03215 (LLWG2_03230) | spx | 625915..626313 (+) | 399 | WP_003129597.1 | transcriptional regulator Spx | - |
| LLWG2_RS03220 (LLWG2_03235) | - | 626464..626598 (-) | 135 | WP_014572996.1 | hypothetical protein | - |
| LLWG2_RS03225 (LLWG2_03240) | - | 626695..627858 (-) | 1164 | WP_011675640.1 | ABC transporter permease | - |
| LLWG2_RS03230 (LLWG2_03245) | istB | 627949..628707 (-) | 759 | WP_003331414.1 | IS21-like element IS712 family helper ATPase IstB | - |
| LLWG2_RS03235 (LLWG2_03250) | istA | 628719..629942 (-) | 1224 | WP_064305106.1 | IS21-like element IS712 family transposase | - |
| LLWG2_RS03240 (LLWG2_03255) | - | 630354..631418 (+) | 1065 | Protein_609 | HAD-IC family P-type ATPase | - |
| LLWG2_RS03245 (LLWG2_03260) | - | 631470..632581 (+) | 1112 | WP_101944661.1 | IS3-like element IS981 family transposase | - |
| LLWG2_RS03250 (LLWG2_03265) | - | 632737..633627 (+) | 891 | WP_064305134.1 | IS982-like element IS982B family transposase | - |
| LLWG2_RS03255 (LLWG2_03270) | - | 633971..634789 (+) | 819 | WP_228764453.1 | polysaccharide deacetylase family protein | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 22064.27 Da Isoelectric Point: 4.7423
>NTDB_id=854805 LLWG2_RS03205 WP_064305133.1 624468..625067(-) (clpP) [Lactococcus cremoris strain Wg2]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKIRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKIRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK
Nucleotide
Download Length: 600 bp
>NTDB_id=854805 LLWG2_RS03205 WP_064305133.1 624468..625067(-) (clpP) [Lactococcus cremoris strain Wg2]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAATACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAATACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Lactococcus lactis subsp. cremoris KW2 |
99.497 |
100 |
0.995 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
98.995 |
100 |
0.99 |
| clpP | Streptococcus mutans UA159 |
86.735 |
98.492 |
0.854 |
| clpP | Streptococcus thermophilus LMD-9 |
86.224 |
98.492 |
0.849 |
| clpP | Streptococcus thermophilus LMG 18311 |
86.224 |
98.492 |
0.849 |
| clpP | Streptococcus pyogenes MGAS315 |
85.204 |
98.492 |
0.839 |
| clpP | Streptococcus pyogenes JRS4 |
85.204 |
98.492 |
0.839 |
| clpP | Streptococcus pneumoniae D39 |
84.103 |
97.99 |
0.824 |
| clpP | Streptococcus pneumoniae TIGR4 |
84.103 |
97.99 |
0.824 |
| clpP | Streptococcus pneumoniae R6 |
84.103 |
97.99 |
0.824 |
| clpP | Streptococcus pneumoniae Rx1 |
84.103 |
97.99 |
0.824 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
57.895 |
95.477 |
0.553 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
56.995 |
96.985 |
0.553 |