Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V1460_RS29675 Genome accession   NZ_CP146101
Coordinates   6605259..6605864 (-) Length   201 a.a.
NCBI ID   WP_338678261.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 6600259..6610864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS29660 (V1460_29660) - 6601933..6602985 (+) 1053 WP_338676671.1 hypothetical protein -
  V1460_RS29665 (V1460_29665) clpX 6603079..6604362 (-) 1284 WP_338676672.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V1460_RS29670 (V1460_29670) clpP 6604510..6605187 (-) 678 WP_338676673.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V1460_RS29675 (V1460_29675) clpP 6605259..6605864 (-) 606 WP_338678261.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V1460_RS29680 (V1460_29680) tig 6606280..6607653 (-) 1374 WP_338676674.1 trigger factor -
  V1460_RS29695 (V1460_29695) - 6608293..6608466 (+) 174 WP_338676675.1 hypothetical protein -
  V1460_RS29700 (V1460_29700) - 6608470..6608664 (-) 195 WP_338676676.1 hypothetical protein -
  V1460_RS29705 (V1460_29705) - 6609055..6610365 (+) 1311 WP_338676677.1 acyltransferase family protein -
  V1460_RS29710 (V1460_29710) - 6610289..6610762 (-) 474 WP_338676678.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21100.84 Da        Isoelectric Point: 4.5383

>NTDB_id=854669 V1460_RS29675 WP_338678261.1 6605259..6605864(-) (clpP) [Streptomyces sp. SCSIO 30461]
MPNAAGEPSIGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAADPEKDVYLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPHTDILMHQGSAGIGGTASDIKIQAEYLLRTKQRMAQITAHHSGQSVE
TIIRDGDRDRWFTAEEAKDYGLIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=854669 V1460_RS29675 WP_338678261.1 6605259..6605864(-) (clpP) [Streptomyces sp. SCSIO 30461]
ATGCCTAACGCCGCCGGTGAGCCGTCCATCGGTGGAGGCCTCGGCGACCAGGTCTACAGCCGGCTGCTCGGCGAGCGCAT
CATCTTCCTGGGCCAGCAGGTGGACGACGATATCGCCAACAAGATCACGGCACAGCTCCTTCTCCTGGCCGCCGACCCCG
AGAAGGACGTCTACCTCTACATCAACAGCCCCGGTGGCTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGGAGGCACCGCGGG
CAAGCGCTTCGCGCTGCCGCACACCGACATCCTCATGCACCAGGGCTCCGCCGGTATCGGCGGCACCGCGTCGGACATCA
AGATCCAGGCCGAGTACCTGCTGCGCACCAAGCAGCGGATGGCGCAGATCACCGCGCACCACTCCGGTCAGTCGGTCGAG
ACGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACGGCTGAGGAGGCCAAGGACTACGGGCTCATCGACGAGATCAT
CTCCGCTGCCTCGGGCGTTCCGGGCGGCGGTGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

52.128

93.532

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.596

93.532

0.483
  clpP Bacillus subtilis subsp. subtilis str. 168

55.233

85.572

0.473
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.351

92.04

0.473
  clpP Streptococcus mutans UA159

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMD-9

51.724

86.567

0.448
  clpP Streptococcus thermophilus LMG 18311

51.724

86.567

0.448
  clpP Streptococcus pneumoniae D39

50.847

88.06

0.448
  clpP Streptococcus pneumoniae R6

50.847

88.06

0.448
  clpP Streptococcus pneumoniae TIGR4

50.847

88.06

0.448
  clpP Streptococcus pneumoniae Rx1

50.847

88.06

0.448
  clpP Streptococcus pyogenes JRS4

51.149

86.567

0.443
  clpP Streptococcus pyogenes MGAS315

51.149

86.567

0.443