Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRA03_RS25600 Genome accession   NZ_CP129604
Coordinates   4867642..4868223 (-) Length   193 a.a.
NCBI ID   WP_000991609.1    Uniprot ID   A0A853X8N5
Organism   Bacillus paranthracis strain PUMB_17     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4862642..4873223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA03_RS25570 (QRA03_25595) - 4862659..4863495 (-) 837 WP_000557574.1 PP2C family serine/threonine-protein phosphatase -
  QRA03_RS25575 (QRA03_25600) - 4863479..4863964 (-) 486 WP_002092098.1 HIT family protein -
  QRA03_RS25580 (QRA03_25605) - 4864067..4864237 (-) 171 WP_002092099.1 hypothetical protein -
  QRA03_RS25585 (QRA03_25610) - 4864534..4865370 (-) 837 WP_001084753.1 proline/glycine betaine ABC transporter permease -
  QRA03_RS25590 (QRA03_25615) - 4865363..4866568 (-) 1206 WP_000370623.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  QRA03_RS25595 (QRA03_25620) - 4866739..4867596 (+) 858 WP_001227645.1 glycine betaine ABC transporter substrate-binding protein -
  QRA03_RS25600 (QRA03_25625) clpP 4867642..4868223 (-) 582 WP_000991609.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRA03_RS25605 (QRA03_25630) - 4868245..4868931 (-) 687 WP_000337499.1 RNA polymerase subunit sigma-70 -
  QRA03_RS25610 (QRA03_25635) - 4869075..4869395 (+) 321 WP_001125382.1 2Fe-2S iron-sulfur cluster-binding protein -
  QRA03_RS25615 (QRA03_25640) rpiA 4869400..4870062 (+) 663 WP_001049998.1 ribose 5-phosphate isomerase A -
  QRA03_RS25620 (QRA03_25645) - 4870171..4870605 (+) 435 WP_000555714.1 GNAT family N-acetyltransferase -
  QRA03_RS25625 (QRA03_25650) - 4870736..4872103 (-) 1368 WP_000795731.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21192.49 Da        Isoelectric Point: 5.3394

>NTDB_id=854544 QRA03_RS25600 WP_000991609.1 4867642..4868223(-) (clpP) [Bacillus paranthracis strain PUMB_17]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=854544 QRA03_RS25600 WP_000991609.1 4867642..4868223(-) (clpP) [Bacillus paranthracis strain PUMB_17]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTGAAAGA
CCGTATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATCAATAGCCCAGGCGGATCAACGACAGCGGGATTTGCTATATTAGATACA
ATGAATTTAATCAAACCTGATGTACAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCAAAAGGGCAGGCAA
CAGAAATTGAAATAACAGCAAAAAGAATTTTAAAATTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853X8N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492