Detailed information NTG0853995

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: QYM01_RS05505
• Genome accession: NZ_CP129527
• Coordinates: 1142016..1144109 (+)
• Length: 697 a.a.
• NCBI ID: WP_154298999.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain BJ-1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1137016..1149109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM01_RS05485 (QYM01_05485)	-	1137202..1138485 (-)	1284	WP_301899157.1	homoserine dehydrogenase	-
QYM01_RS05490 (QYM01_05490)	-	1138656..1139621 (+)	966	WP_206158662.1	polysaccharide deacetylase family protein	-
QYM01_RS05495 (QYM01_05495)	-	1139918..1140724 (-)	807	WP_301899158.1	DNA/RNA non-specific endonuclease	-
QYM01_RS05500 (QYM01_05500)	ndk	1141225..1141644 (-)	420	WP_037581033.1	nucleoside-diphosphate kinase	-
QYM01_RS05505 (QYM01_05505)	clpC	1142016..1144109 (+)	2094	WP_154298999.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
QYM01_RS05510 (QYM01_05510)	-	1144298..1147300 (-)	3003	WP_301899160.1	leucine-rich repeat domain-containing protein	-
QYM01_RS05515 (QYM01_05515)	yihA	1147663..1148262 (-)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 697 a.a.
• Molecular weight: 76695.71 Da
• Isoelectric Point: 5.1764

>NTDB_id=853995 QYM01_RS05505 WP_154298999.1 1142016..1144109(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MTTYYGKDPFGNMDDIFNQLMGNIGGYRSENRRYLVNGREMTPEEFQEYRKTGKLAATEGQDKQAGSLKKDGILTKLGTN
LTEEARQGRLDPVIGRNDEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNMVKEVKEAGNIILFFDEIHQILGAGSAGSDSGSKGLADILKPALSRGELTLIGATTQDEYRNTILK
NAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAIDYAIQYIPQRSLPDKAIDLVDMTAAHLAAQH
PVTDLKSLEAEIAKQKELQEKAVAAEDFEKALTAKTRIEELQKQINHHSEGQKVTATVNDIAESVERLTGVPVSNMGAND
LERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNTVI
IATSNAGFGHQAGDSADQEPAIMERIAPYFRPEFLNRFNGVIEFNHLAKKDLQEIVALMLAEVNQTLAKKGISLEVTDDV
KERLIDLGYDHAMGVRPLRRVIEQEIRDRITDYYLDHPTAKHLLASLDQDTITISEK

Nucleotide

• Length: 2094 bp

>NTDB_id=853995 QYM01_RS05505 WP_154298999.1 1142016..1144109(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGACAACTTATTATGGAAAAGACCCCTTTGGAAATATGGACGATATTTTTAATCAATTAATGGGAAACATTGGTGGCTA
TCGCAGTGAAAATCGGCGCTATCTTGTCAATGGACGTGAGATGACACCAGAGGAATTTCAGGAATACCGGAAAACCGGTA
AGCTAGCTGCAACTGAAGGACAAGACAAACAGGCTGGTAGCCTTAAAAAAGACGGCATTCTAACCAAGCTCGGAACAAAT
CTGACTGAAGAAGCTCGTCAAGGAAGGCTAGATCCTGTCATCGGACGAAACGATGAGATTCAAGCAACCGCAGAAATTCT
AGCTAGGCGAACCAAGAATAACCCTGTGCTTGTCGGTGACGCTGGCGTTGGTAAAACTGCTGTTGTCGAAGGTTTAGCCC
AGGCTATCGTCAATGGTGATGTGCCAGCTGCTATCAAAAATAAAGAGATTATCTCAATTGATATTTCTGGCCTTGAGGCT
GGCACACAGTATCGTGGCTCCTTTGAAGAAAACATTCAAAACATGGTTAAAGAGGTTAAAGAGGCTGGTAATATTATCCT
CTTCTTTGACGAAATTCATCAAATTCTTGGTGCAGGGTCAGCTGGTTCAGATTCAGGCTCTAAGGGCTTGGCTGATATTC
TAAAGCCAGCCCTCTCACGCGGTGAGTTGACCTTGATTGGTGCCACAACTCAAGATGAGTATCGCAATACTATTTTAAAA
AATGCTGCCCTTGCTCGTCGTTTCAACGAGGTTAAGGTTAATGCTCCTTCAGCAGAGGATACCTTCCACATTTTGATGGG
CATTCGCAACCTCTACGAGCAGCACCACAATGTGATCCTGCCAGATTCTGTCTTAAAAGCAGCTATTGATTATGCTATCC
AATATATTCCACAACGAAGCCTGCCTGATAAAGCCATTGACCTTGTTGATATGACGGCTGCCCACCTAGCAGCTCAGCAC
CCTGTCACTGATCTAAAGTCACTTGAAGCAGAAATCGCTAAGCAAAAGGAGCTACAGGAAAAGGCTGTTGCAGCAGAAGA
CTTTGAAAAGGCCTTGACTGCTAAGACACGCATTGAGGAGCTCCAAAAGCAAATCAATCATCACAGTGAAGGGCAAAAGG
TCACTGCCACCGTCAATGACATTGCAGAATCTGTTGAACGACTAACTGGTGTCCCAGTCTCAAATATGGGGGCTAATGAT
TTAGAAAGGCTCAAAGAAATCAGTAATCGTCTTAAAGGCCATGTTATCGGACAAGATGGTGCAGTTGAGGCTGTTGCTCG
TGCGATTCGACGCAATAGAGCAGGCTTTGATGATGGCAATCGTCCAATTGGCTCCTTCCTTTTTGTTGGTCCGACTGGTG
TCGGCAAGACCGAGCTGGCTAAGCAGTTAGCCCTTGATATGTTCGGCTCAAAGGACGCTATCATTCGCTTAGACATGTCT
GAATATAGTGACCGCACAGCTGTTTCCAAATTAATCGGAACAACAGCTGGCTATGTTGGCTATGATGATAATCAAAATAC
CCTTACAGAACGTGTCCGTCGCAGTCCTTACTCTATCATCTTGCTTGATGAAATCGAAAAAGCAGACCCACAGGTCATTA
CACTGCTTCTTCAAGTGCTTGATGATGGGCGATTGACAGATGGACAAGGCAACACGATCAATTTCAAAAATACGGTTATC
ATCGCAACCTCTAATGCTGGTTTTGGCCATCAAGCAGGAGATAGTGCTGATCAAGAGCCTGCTATCATGGAGCGTATTGC
ACCTTACTTTAGACCAGAATTCTTGAATCGCTTCAACGGTGTCATCGAATTCAACCATTTAGCGAAAAAGGATCTACAAG
AAATCGTTGCGTTAATGCTAGCAGAGGTGAACCAAACCCTTGCTAAAAAAGGCATTAGCCTTGAGGTGACTGATGATGTC
AAAGAGCGTTTGATTGATCTGGGCTATGATCATGCGATGGGAGTTCGTCCACTTAGACGTGTCATCGAACAAGAAATTCG
TGACCGTATTACTGACTACTACCTGGATCACCCGACTGCTAAGCACCTATTAGCAAGTCTTGATCAAGATACTATTACAA
TAAGTGAGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (607-679)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• AAA lid domain (AAA_lid_9) (257-352)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.207	100	0.482
clpE	Streptococcus mutans UA159	48.17	97.991	0.472
clpE	Streptococcus pneumoniae D39	50.794	90.387	0.459
clpE	Streptococcus pneumoniae R6	50.794	90.387	0.459
clpE	Streptococcus pneumoniae Rx1	50.794	90.387	0.459
clpE	Streptococcus pneumoniae TIGR4	50.794	90.387	0.459
clpC	Bacillus subtilis subsp. subtilis str. 168	45.833	89.527	0.41
clpC	Streptococcus mutans UA159	43.226	88.953	0.385
clpC	Streptococcus pneumoniae Rx1	43.678	87.374	0.382
clpC	Streptococcus pneumoniae D39	43.678	87.374	0.382
clpC	Streptococcus pneumoniae TIGR4	43.514	87.374	0.38
clpC	Streptococcus thermophilus LMD-9	42.718	88.666	0.379
clpC	Streptococcus thermophilus LMG 18311	42.557	88.666	0.377
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.326	88.809	0.376