Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QYM42_RS05410 Genome accession   NZ_CP129526
Coordinates   1070648..1071052 (-) Length   134 a.a.
NCBI ID   WP_021722514.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065648..1076052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS05380 (QYM42_05380) - 1065804..1067336 (+) 1533 WP_033899424.1 Nramp family divalent metal transporter -
  QYM42_RS05385 (QYM42_05385) - 1067438..1068406 (+) 969 WP_003130649.1 PhoH family protein -
  QYM42_RS05390 (QYM42_05390) - 1068464..1068943 (+) 480 WP_228248033.1 NUDIX hydrolase -
  QYM42_RS05395 (QYM42_05395) ybeY 1069095..1069583 (+) 489 WP_021722516.1 rRNA maturation RNase YbeY -
  QYM42_RS05400 (QYM42_05400) - 1069567..1070022 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  QYM42_RS05405 (QYM42_05405) - 1070036..1070614 (+) 579 WP_021722515.1 nucleotidyltransferase family protein -
  QYM42_RS05410 (QYM42_05410) comFC 1070648..1071052 (-) 405 WP_021722514.1 ComF family protein Machinery gene
  QYM42_RS05415 (QYM42_05415) comFA 1071295..1072617 (-) 1323 WP_251900379.1 DEAD/DEAH box helicase Machinery gene
  QYM42_RS05420 (QYM42_05420) - 1072674..1073303 (+) 630 WP_003130660.1 YigZ family protein -
  QYM42_RS05425 (QYM42_05425) - 1073437..1073934 (+) 498 WP_003130662.1 VanZ family protein -
  QYM42_RS05430 (QYM42_05430) - 1073982..1075001 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  QYM42_RS05435 (QYM42_05435) - 1075117..1075863 (+) 747 WP_058208415.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15677.11 Da        Isoelectric Point: 9.8798

>NTDB_id=853927 QYM42_RS05410 WP_021722514.1 1070648..1071052(-) (comFC) [Lactococcus lactis strain ZZ-2]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=853927 QYM42_RS05410 WP_021722514.1 1070648..1071052(-) (comFC) [Lactococcus lactis strain ZZ-2]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.164

100

0.672
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.418
  comFC Latilactobacillus sakei subsp. sakei 23K

39.37

94.776

0.373