Detailed information NTG0853928

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: QYM42_RS05415
• Genome accession: NZ_CP129526
• Coordinates: 1071295..1072617 (-)
• Length: 440 a.a.
• NCBI ID: WP_251900379.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain ZZ-2
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1066295..1077617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM42_RS05385 (QYM42_05385)	-	1067438..1068406 (+)	969	WP_003130649.1	PhoH family protein	-
QYM42_RS05390 (QYM42_05390)	-	1068464..1068943 (+)	480	WP_228248033.1	NUDIX hydrolase	-
QYM42_RS05395 (QYM42_05395)	ybeY	1069095..1069583 (+)	489	WP_021722516.1	rRNA maturation RNase YbeY	-
QYM42_RS05400 (QYM42_05400)	-	1069567..1070022 (+)	456	WP_003130653.1	diacylglycerol kinase family protein	-
QYM42_RS05405 (QYM42_05405)	-	1070036..1070614 (+)	579	WP_021722515.1	nucleotidyltransferase family protein	-
QYM42_RS05410 (QYM42_05410)	comFC	1070648..1071052 (-)	405	WP_021722514.1	ComF family protein	Machinery gene
QYM42_RS05415 (QYM42_05415)	comFA	1071295..1072617 (-)	1323	WP_251900379.1	DEAD/DEAH box helicase	Machinery gene
QYM42_RS05420 (QYM42_05420)	-	1072674..1073303 (+)	630	WP_003130660.1	YigZ family protein	-
QYM42_RS05425 (QYM42_05425)	-	1073437..1073934 (+)	498	WP_003130662.1	VanZ family protein	-
QYM42_RS05430 (QYM42_05430)	-	1073982..1075001 (+)	1020	WP_012897709.1	DUF475 domain-containing protein	-
QYM42_RS05435 (QYM42_05435)	-	1075117..1075863 (+)	747	WP_058208415.1	bifunctional metallophosphatase/5'-nucleotidase	-
QYM42_RS05440 (QYM42_05440)	-	1076156..1076803 (+)	648	WP_251900380.1	GIY-YIG nuclease family protein	-

Sequence

Protein

• Length: 440 a.a.
• Molecular weight: 50130.64 Da
• Isoelectric Point: 10.1065

>NTDB_id=853928 QYM42_RS05415 WP_251900379.1 1071295..1072617(-) (comFA) [Lactococcus lactis strain ZZ-2]
MSTNQEKLFGRLLLKNDILQLIKSTDKISVSKIFSNFLLEAKVNPILGMTSISSNKIKCNRCGTVHIKNSVKLPIGVFYC
PSCIQLGRVRSDEFLYFLPQKNFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTEMIYQVIEQILES
GGVVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDSYFRAPLIIMTSHQLLRFKEAFDLLVIDEVDAFPFRDNEMLYV
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNFPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIEF
GQEFAKQLQLKFPKEKIASVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFHYGKSKAMCQAVREIKKMNQLGGFS

Nucleotide

• Length: 1323 bp

>NTDB_id=853928 QYM42_RS05415 WP_251900379.1 1071295..1072617(-) (comFA) [Lactococcus lactis strain ZZ-2]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATGATATTTTACAACTTATAAAAAGTACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGTTAGAAGCGAAGGTGAATCCAATTTTGGGAATGACTTCAATTTCTT
CCAATAAAATAAAATGCAACCGTTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGGTGTATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGCTCCGATGAATTCTTGTACTTTCTGCCACAAAAGAATTTCCCAAAGAAATC
ATATATAAACTGGTCGGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTCTGTCAGGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGAAATGATTTATCAAGTCATTGAACAAATTTTAGAAAGC
GGTGGGGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAGCTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GTTTCAAGGAAGCTTTTGATTTGCTGGTTATTGATGAAGTTGATGCCTTTCCCTTTAGAGATAATGAAATGCTTTATGTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGAAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTCCCGCGTCGTTTTCACAATTTCCCTTTAGTGGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCTCTTCTTATTTTTGCTGCTGAAATTGAATTT
GGACAAGAATTTGCAAAACAACTACAATTGAAATTTCCTAAAGAAAAAATTGCTTCCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACTTCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCCGCACTGATACAAATGGCTGGACGT
GTGGGTCGTAGTCCTGAACGTCCAACAGGCTTAGTTAGTTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGT
TAGAGAAATCAAAAAAATGAATCAACTTGGAGGTTTTTCATGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (300-403)

• Type III restriction enzyme, res subunit (ResIII) (114-227)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	74.25	90.909	0.675
comFA/cflA	Streptococcus mitis SK321	51.759	90.455	0.468
comFA/cflA	Streptococcus pneumoniae Rx1	51.759	90.455	0.468
comFA/cflA	Streptococcus pneumoniae D39	51.759	90.455	0.468
comFA/cflA	Streptococcus pneumoniae R6	51.759	90.455	0.468
comFA/cflA	Streptococcus pneumoniae TIGR4	51.759	90.455	0.468
comFA/cflA	Streptococcus mitis NCTC 12261	51.005	90.455	0.461
comFA	Bacillus subtilis subsp. subtilis str. 168	36.807	100	0.377