Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR1   Type   Regulator
Locus tag   V6U64_RS03910 Genome accession   NZ_CP145862
Coordinates   872191..873102 (-) Length   303 a.a.
NCBI ID   WP_410537095.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 867191..878102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS03885 (V6U64_03880) - 867607..868512 (+) 906 WP_410537085.1 hypothetical protein -
  V6U64_RS03890 (V6U64_03885) - 868490..869356 (+) 867 WP_410537087.1 hypothetical protein -
  V6U64_RS03895 (V6U64_03890) comR/comR1 869491..870399 (-) 909 WP_410537089.1 XRE family transcriptional regulator Regulator
  V6U64_RS03900 (V6U64_03895) - 870557..871276 (-) 720 WP_410537091.1 ABC transporter permease -
  V6U64_RS03905 (V6U64_03900) - 871269..872105 (-) 837 WP_410537093.1 ABC transporter ATP-binding protein -
  V6U64_RS03910 (V6U64_03905) comR/comR1 872191..873102 (-) 912 WP_410537095.1 XRE family transcriptional regulator Regulator
  V6U64_RS03915 (V6U64_03910) - 873320..873841 (+) 522 WP_226973104.1 RDD family protein -
  V6U64_RS03920 (V6U64_03915) - 873965..874885 (+) 921 WP_272159343.1 multidrug resistance efflux transporter family protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35689.06 Da        Isoelectric Point: 4.8054

>NTDB_id=853385 V6U64_RS03910 WP_410537095.1 872191..873102(-) (comR/comR1) [Streptococcus salivarius strain KSS4]
MSEDIKIKIGKRIREEREHQGLTREQVCDTEEELTVKQLMRIELGRSLPTIVKLQYISDKLGVSLNYLLGETKLDIPEDY
YKAKYKLMKSPVYGDPERIKKKLKDIEELYDNYIDILPEDELFAIDIIERTLNFIAEGEGEDLVEIVFEDYLNQVLKKEQ
YTLNDLLLIKYYSVQCQSSSYDESMIENFRKKLIKQRLQGDELTNVELLGALSAIAGIYVMHHEYEHMKSLVDKMYEIIH
SIMQHSYQPGITMLEAKYYLFYENNKDKATELYHTATVLAEAFDDQVFIKNLKMEMKKDLNTK

Nucleotide


Download         Length: 912 bp        

>NTDB_id=853385 V6U64_RS03910 WP_410537095.1 872191..873102(-) (comR/comR1) [Streptococcus salivarius strain KSS4]
ATGTCAGAAGATATTAAAATCAAGATTGGAAAAAGAATTCGTGAAGAACGTGAGCACCAAGGGCTAACTCGAGAGCAGGT
TTGTGACACCGAAGAAGAATTAACCGTCAAACAACTGATGAGAATTGAGCTCGGTCGCTCATTACCAACTATTGTCAAAC
TGCAGTATATCAGTGATAAATTAGGAGTTTCCCTAAACTATTTGCTAGGTGAAACAAAACTAGACATTCCTGAAGACTAT
TATAAGGCTAAATATAAACTCATGAAGTCTCCTGTCTATGGCGACCCCGAACGTATCAAGAAGAAGCTAAAAGATATTGA
GGAACTCTACGACAACTATATTGATATTCTACCAGAGGACGAGCTTTTTGCTATTGATATCATTGAAAGAACATTAAATT
TCATAGCTGAAGGGGAGGGAGAAGACCTTGTTGAAATAGTATTTGAAGATTATTTAAATCAAGTATTGAAAAAGGAACAG
TACACATTGAATGATCTTTTATTGATAAAATATTATTCTGTACAGTGCCAATCATCTTCATATGATGAATCTATGATCGA
GAATTTTCGAAAAAAATTGATAAAACAAAGATTGCAAGGAGATGAATTAACCAATGTGGAACTATTGGGAGCATTATCAG
CTATAGCTGGGATATATGTTATGCACCATGAATACGAACATATGAAGTCTCTCGTCGATAAGATGTATGAAATCATACAT
TCCATTATGCAACACTCATATCAGCCAGGTATAACAATGCTTGAAGCAAAATACTATCTCTTCTATGAGAACAATAAAGA
TAAAGCAACAGAGCTCTATCATACAGCCACCGTACTAGCCGAAGCCTTCGACGACCAAGTCTTCATCAAAAATCTTAAAA
TGGAAATGAAAAAAGATTTAAATACGAAATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(77-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

40.878

97.69

0.399
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

39.384

96.37

0.38
  comR Streptococcus thermophilus LMD-9

39.519

96.04

0.38
  comR Streptococcus thermophilus LMG 18311

39.519

96.04

0.38
  comR Streptococcus salivarius strain HSISS4

39.175

96.04

0.376
  comR Streptococcus salivarius SK126

39.649

94.059

0.373