Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QYM03_RS02310 Genome accession   NZ_CP129401
Coordinates   488200..489465 (-) Length   421 a.a.
NCBI ID   WP_054744931.1    Uniprot ID   -
Organism   Shewanella algae strain MCCC 1A11468     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483200..494465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM03_RS02285 (QYM03_02285) mutT 485212..485610 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  QYM03_RS02290 (QYM03_02290) yacG 485610..485822 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  QYM03_RS02295 (QYM03_02295) zapD 485867..486607 (-) 741 WP_028779562.1 cell division protein ZapD -
  QYM03_RS02300 (QYM03_02300) coaE 486604..487215 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  QYM03_RS02305 (QYM03_02305) pilD 487216..488130 (-) 915 WP_208163199.1 A24 family peptidase Machinery gene
  QYM03_RS02310 (QYM03_02310) pilC 488200..489465 (-) 1266 WP_054744931.1 type II secretion system F family protein Machinery gene
  QYM03_RS02315 (QYM03_02315) pilB 489618..491324 (-) 1707 WP_156020398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QYM03_RS02320 (QYM03_02320) - 491334..491747 (-) 414 WP_054744933.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QYM03_RS02325 (QYM03_02325) nadC 492604..493464 (-) 861 WP_208221060.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QYM03_RS02330 (QYM03_02330) ampD 493623..494201 (+) 579 WP_208141209.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45730.88 Da        Isoelectric Point: 10.3084

>NTDB_id=853001 QYM03_RS02310 WP_054744931.1 488200..489465(-) (pilC) [Shewanella algae strain MCCC 1A11468]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGNNRDGKLSSGELRGTSITEIKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTTIELIARGHEKNKVRVLLGTVLADIQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLVAVVPQFEEIFKGFGAELPAFTQLIVNISRGLQSTW
YLFLAGIVISVWLFVRAHRNSEHFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=853001 QYM03_RS02310 WP_054744931.1 488200..489465(-) (pilC) [Shewanella algae strain MCCC 1A11468]
ATGGCAACCGCAACGGCGACAGCAAAAAACAATAAAGCCAAGAATAAAGGCGCCAAAGCCCAACCCAAGATCCACACCTT
TACCTGGAAGGGGAATAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGCATTACTGAGATAAAAACCC
TGCTTAAAAGCCAAGGGATTAATCCCAAGACGGTACGTAAAAAATCAGCGTCTATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTAATTACCCGCCAGATAGCCACTATGCTGGCTGCCGGGGTTCCCTTGGTAACAACTATTGAATTGAT
CGCCCGCGGCCATGAAAAAAATAAGGTGCGGGTACTTCTCGGCACTGTGCTAGCCGATATCCAGGCCGGCATCCCGCTGT
CCGATGCCCTTCGTCCCCATAGAGCATACTTCGATGATCTCTACGTCGACTTGGTGGCCGCCGGTGAACATTCAGGTTCC
TTGGATGCCGTATTTGATCGTATCGCCACCTACAGGGAAAAGTCAGAGGCCCTTAAGTCGAAAATTAAGAAAGCCATGTT
TTACCCTGCTGCAGTGGTGGTTGTTGCCATAGCCGTTACCGTGCTGCTGCTTGTTGCCGTTGTACCTCAATTTGAAGAAA
TCTTTAAGGGATTCGGCGCCGAACTGCCTGCCTTTACCCAATTAATTGTCAATATCAGCCGCGGCCTTCAGAGTACCTGG
TATCTATTTCTAGCTGGTATCGTTATCAGTGTCTGGCTGTTTGTCCGTGCTCACCGCAACTCAGAGCACTTCCGTAACCG
TATCGACGAAATGGTGCTTAAGATCCCCGCGATAGGAGATATCTTACATAAAGGTGCTATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGCAACTATGTCTAC
CGCAAGGCGCTGTTGAATGTGCGTACTGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCTATT
CCCCGATATGTTGATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGATAATATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGATGGCCTTTCCAGCCTGATAGAACCCATTATGATGGTAGTTATCGGCACC
ATAGTCGGCGGCCTAATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.887

94.774

0.52
  pilC Acinetobacter baylyi ADP1

49.386

96.675

0.477
  pilC Legionella pneumophila strain ERS1305867

49.01

95.962

0.47
  pilC Acinetobacter baumannii D1279779

47.304

96.912

0.458
  pilC Vibrio cholerae strain A1552

46.883

95.249

0.447
  pilC Vibrio campbellii strain DS40M4

44.913

95.724

0.43
  pilG Neisseria meningitidis 44/76-A

42.029

98.337

0.413
  pilG Neisseria gonorrhoeae MS11

42.029

98.337

0.413