NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QYM22_RS21035	Genome accession	NZ_CP129342
Coordinates	3997920..3998501 (+)	Length	193 a.a.
NCBI ID	WP_046131841.1	Uniprot ID	A0AAE2JUY9
Organism	Bacillus glycinifermentans strain SRCM12603
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3992920..4003501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM22_RS21015 (QYM22_21015)	-	3993847..3995298 (+)	1452	WP_046131844.1	glycoside hydrolase family 68 protein	-
QYM22_RS21020 (QYM22_21020)	-	3995379..3996914 (+)	1536	WP_099047077.1	glycoside hydrolase family 32 protein	-
QYM22_RS21025 (QYM22_21025)	-	3997112..3997543 (+)	432	WP_046131842.1	SMI1/KNR4 family protein	-
QYM22_RS21035 (QYM22_21035)	clpP	3997920..3998501 (+)	582	WP_046131841.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QYM22_RS21040 (QYM22_21040)	-	3998559..3999158 (-)	600	WP_046131840.1	DJ-1/PfpI family protein	-
QYM22_RS21045 (QYM22_21045)	-	3999187..3999762 (-)	576	WP_046131839.1	TIGR00730 family Rossman fold protein	-
QYM22_RS21050 (QYM22_21050)	-	3999875..4000198 (+)	324	WP_046131838.1	MazG-like family protein	-
QYM22_RS21055 (QYM22_21055)	-	4000195..4001172 (+)	978	WP_046131837.1	HD domain-containing protein	-
QYM22_RS21060 (QYM22_21060)	-	4001211..4002828 (-)	1618	Protein_4120	solute carrier family 23 protein	-
QYM22_RS21065 (QYM22_21065)	-	4002853..4003439 (-)	587	Protein_4121	carbonic anhydrase	-

Sequence

Protein

Download Length: 193 a.a. Molecular weight: 21270.45 Da Isoelectric Point: 4.9255

                                >NTDB_id=852512 QYM22_RS21035 WP_046131841.1 3997920..3998501(+) (clpP) [Bacillus glycinifermentans strain SRCM12603]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQLIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ

PLEIIERDTDRDNFKSAEEAKEYGLIDKILTRR

Nucleotide

Download Length: 582 bp

                                >NTDB_id=852512 QYM22_RS21035 WP_046131841.1 3997920..3998501(+) (clpP) [Bacillus glycinifermentans strain SRCM12603]

ATGAATTTAATACCTACAGTCATTGAACAGACGAATCGCGGGGAAAGAGCATATGACATCTACTCACGCCTGCTGAAAGA

CCGCATCATTATGCTAGGGTCGGCAATCGATGACAATGTTGCGAACTCCATTGTATCACAGCTTTTGTTCCTTGAAGCGG

AAGATCCTGAAAAAGATATCAGCATCTACATTAACAGCCCGGGCGGCTCCATTACGGCCGGTATGGCGATCTATGATACG

ATGCAGCTTATTAAGCCGCAAGTCTCCACGATTTGTACGGGAATGGCGGCATCCATGGGTGCGTTCCTTCTTGCTGCAGG

TGAGAAAGGGAAACGCTATGCCCTTCCAAACAGTGAAGTGATGATTCACCAGCCGCTCGGCGGAGCTCAAGGTCAGGCGA

CTGAAATCGAAATTGCCGCAAAACGCATTCTTTCATTGCGCGACAAGCTGAACAAAATTCTTGCGGAACGCACTGGACAG

CCGCTTGAAATCATTGAGCGCGACACTGACCGCGACAACTTTAAATCGGCTGAAGAAGCAAAAGAATACGGCTTAATCGA

TAAAATCCTGACGCGCAGGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	94.271	99.482	0.938
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.947	98.446	0.679
clpP	Streptococcus thermophilus LMG 18311	58.639	98.964	0.58
clpP	Streptococcus thermophilus LMD-9	58.639	98.964	0.58
clpP	Streptococcus pneumoniae Rx1	57.895	98.446	0.57
clpP	Streptococcus pneumoniae D39	57.895	98.446	0.57
clpP	Streptococcus pneumoniae R6	57.895	98.446	0.57
clpP	Streptococcus pneumoniae TIGR4	57.895	98.446	0.57
clpP	Lactococcus lactis subsp. cremoris KW2	57.368	98.446	0.565
clpP	Streptococcus pyogenes JRS4	56.316	98.446	0.554
clpP	Streptococcus pyogenes MGAS315	56.316	98.446	0.554
clpP	Streptococcus mutans UA159	54.974	98.964	0.544
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.263	98.446	0.544

Detailed information NTG0852512