Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   QYR59_RS06675 Genome accession   NZ_CP129326
Coordinates   1353727..1355085 (-) Length   452 a.a.
NCBI ID   WP_003101335.1    Uniprot ID   -
Organism   Streptococcus iniae strain P3SAB     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348727..1360085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR59_RS06665 (QYR59_06670) rnc 1352117..1352809 (-) 693 WP_003101331.1 ribonuclease III -
  QYR59_RS06670 (QYR59_06675) - 1352912..1353723 (-) 812 Protein_1258 MBL fold metallo-hydrolase -
  QYR59_RS06675 (QYR59_06680) vicK 1353727..1355085 (-) 1359 WP_003101335.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QYR59_RS06680 (QYR59_06685) vicR 1355078..1355788 (-) 711 WP_003101337.1 response regulator YycF Regulator
  QYR59_RS06685 (QYR59_06690) - 1356045..1356842 (+) 798 WP_367562166.1 amino acid ABC transporter ATP-binding protein -
  QYR59_RS06690 (QYR59_06695) - 1356839..1357658 (+) 820 Protein_1262 transporter substrate-binding domain-containing protein -
  QYR59_RS06695 (QYR59_06700) - 1357673..1358374 (+) 702 WP_367561393.1 amino acid ABC transporter permease -
  QYR59_RS06700 (QYR59_06705) - 1358390..1359038 (+) 649 Protein_1264 amino acid ABC transporter permease -
  QYR59_RS06705 (QYR59_06710) - 1359076..1360083 (-) 1008 WP_367561394.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 51565.95 Da        Isoelectric Point: 4.8298

>NTDB_id=852169 QYR59_RS06675 WP_003101335.1 1353727..1355085(-) (vicK) [Streptococcus iniae strain P3SAB]
MTKDIIGNLSLFELAILSLLIFVAVYFVHLALRDYRNAKIIRQMSHKIRDLINGRYTDDINQKADIELMELSEQLNDLSD
VFRLSHENLAQEKNRLASILAYMSDGVLATDRSGQILMINETAQKQLNLSREEALQKNITDLLDNDTPYTYRELVSKTPV
VTLNRRDEMGEFITLRLRFALNRRESGFISGLVVVLHDMTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALK
EEIAPNFIKVSLDETNRMMRMISDLLNLSRIDNNVTTLAVEMTNFTAFMTSILNRFDLVKTQNTVAGKSYEIIRDYPITS
VWVEIDNDKMTQVIENILNNAIKYSPDGGKIGVKMKTTDTQLIISISDEGLGIPKKDLPLIFDLFYRVDKARSRAQGGTG
LGLAIAKEIIKQHNGFIWAKSDYGKGSTFTIVLPYEKDVMTDGEDDWEDDID

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=852169 QYR59_RS06675 WP_003101335.1 1353727..1355085(-) (vicK) [Streptococcus iniae strain P3SAB]
ATGACTAAAGATATTATTGGTAACTTATCCTTATTTGAATTAGCAATTCTGTCTCTTCTTATTTTTGTTGCTGTTTATTT
TGTCCACTTGGCTCTTCGTGATTATCGAAACGCTAAGATTATTAGACAAATGAGCCATAAAATACGGGACTTGATTAATG
GTCGTTATACTGATGACATTAATCAAAAGGCAGATATTGAATTAATGGAGCTGTCTGAACAGTTAAACGACTTATCAGAT
GTTTTTCGCTTAAGCCATGAAAATTTAGCCCAGGAAAAAAATCGTTTGGCCAGTATTCTTGCCTATATGAGCGATGGTGT
CTTGGCAACTGACCGATCAGGTCAAATTTTGATGATTAATGAAACAGCACAAAAACAATTGAATTTAAGCCGTGAAGAAG
CTCTGCAAAAAAACATTACAGATTTACTTGATAATGACACTCCTTACACCTATCGGGAATTAGTGTCTAAAACACCTGTT
GTGACCTTAAACCGACGTGATGAAATGGGAGAATTTATAACCTTAAGATTGCGTTTTGCCTTAAATCGCCGTGAAAGTGG
TTTTATTTCAGGATTAGTTGTCGTTTTACATGACATGACCGAGCAAGAAAAAGAAGAACGAGAACGTCGTCTCTTTGTTT
CTAATGTTAGTCATGAATTAAGAACGCCATTAACATCTGTTAAGTCATATTTAGAGGCTTTGGATGAAGGTGCCTTAAAA
GAAGAAATTGCCCCCAATTTTATCAAGGTTTCTTTAGATGAGACAAATCGTATGATGCGGATGATTTCTGATCTTTTGAA
TTTATCAAGAATTGACAATAATGTAACGACCTTAGCTGTTGAAATGACTAACTTTACAGCCTTTATGACCTCTATTTTAA
ACCGTTTTGACTTGGTTAAAACGCAAAATACAGTTGCAGGGAAAAGCTATGAAATTATTCGAGATTATCCCATTACATCT
GTATGGGTTGAGATTGATAATGATAAAATGACACAAGTCATTGAAAATATTCTTAACAATGCCATTAAGTATTCCCCAGA
TGGTGGAAAGATTGGTGTTAAGATGAAAACTACTGACACGCAATTGATTATCTCTATTTCTGATGAAGGATTGGGCATAC
CTAAAAAAGACTTGCCATTGATTTTTGATCTTTTTTACCGTGTTGATAAGGCTAGAAGTCGCGCCCAAGGTGGTACTGGC
TTAGGCTTGGCTATTGCAAAAGAAATTATTAAGCAACACAATGGCTTTATTTGGGCAAAAAGTGACTATGGCAAGGGCTC
TACATTTACCATTGTCTTGCCATATGAAAAAGATGTGATGACAGATGGAGAAGATGATTGGGAGGATGATATAGACTAA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(95-198)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

72.881

91.372

0.666
  micB Streptococcus pneumoniae Cp1015

65.882

94.027

0.619