Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QYH60_RS09920 Genome accession   NZ_CP129292
Coordinates   1987881..1988285 (+) Length   134 a.a.
NCBI ID   WP_021722514.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982881..1993285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS09895 (QYH60_09895) - 1983070..1983816 (-) 747 WP_058208415.1 bifunctional metallophosphatase/5'-nucleotidase -
  QYH60_RS09900 (QYH60_09900) - 1983932..1984951 (-) 1020 WP_058208414.1 DUF475 domain-containing protein -
  QYH60_RS09905 (QYH60_09905) - 1984999..1985496 (-) 498 WP_058208413.1 VanZ family protein -
  QYH60_RS09910 (QYH60_09910) - 1985630..1986259 (-) 630 WP_003130660.1 YigZ family protein -
  QYH60_RS09915 (QYH60_09915) comFA 1986316..1987638 (+) 1323 WP_058208412.1 DEAD/DEAH box helicase Machinery gene
  QYH60_RS09920 (QYH60_09920) comFC 1987881..1988285 (+) 405 WP_021722514.1 ComF family protein Machinery gene
  QYH60_RS09925 (QYH60_09925) - 1988319..1988897 (-) 579 WP_301400880.1 nucleotidyltransferase family protein -
  QYH60_RS09930 (QYH60_09930) - 1988911..1989366 (-) 456 WP_003130653.1 diacylglycerol kinase -
  QYH60_RS09935 (QYH60_09935) ybeY 1989350..1989838 (-) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  QYH60_RS09940 (QYH60_09940) - 1989983..1990468 (-) 486 WP_058208410.1 NUDIX hydrolase -
  QYH60_RS09945 (QYH60_09945) - 1990526..1991494 (-) 969 WP_003130649.1 PhoH family protein -
  QYH60_RS09950 (QYH60_09950) - 1991596..1993128 (-) 1533 WP_191670439.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15677.11 Da        Isoelectric Point: 9.8798

>NTDB_id=852107 QYH60_RS09920 WP_021722514.1 1987881..1988285(+) (comFC) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=852107 QYH60_RS09920 WP_021722514.1 1987881..1988285(+) (comFC) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.164

100

0.672
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.418
  comFC Latilactobacillus sakei subsp. sakei 23K

39.37

94.776

0.373