Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QYH60_RS01920 Genome accession   NZ_CP129292
Coordinates   385573..386361 (-) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 380573..391361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS01900 (QYH60_01900) gatB 381220..382653 (-) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  QYH60_RS01905 (QYH60_01905) - 382693..383295 (-) 603 WP_023163651.1 NUDIX hydrolase -
  QYH60_RS01910 (QYH60_01910) gatA 383299..384759 (-) 1461 WP_015425676.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  QYH60_RS01915 (QYH60_01915) gatC 384759..385064 (-) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  QYH60_RS01920 (QYH60_01920) codY 385573..386361 (-) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QYH60_RS01925 (QYH60_01925) - 386514..387728 (-) 1215 WP_021723265.1 pyridoxal phosphate-dependent aminotransferase -
  QYH60_RS01930 (QYH60_01930) - 387797..389380 (-) 1584 WP_058208230.1 APC family permease -
  QYH60_RS01935 (QYH60_01935) - 389577..389816 (-) 240 WP_003129719.1 hypothetical protein -
  QYH60_RS01940 (QYH60_01940) - 389828..390037 (-) 210 WP_010905160.1 hypothetical protein -
  QYH60_RS01945 (QYH60_01945) - 390183..390974 (-) 792 WP_010905159.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=852073 QYH60_RS01920 WP_003129722.1 385573..386361(-) (codY) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=852073 QYH60_RS01920 WP_003129722.1 385573..386361(-) (codY) [Lactococcus lactis subsp. lactis strain KMGR2-43]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGAATTACACGTTCAGTCATCGTTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462