Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QWY22_RS19460 Genome accession   NZ_CP129238
Coordinates   3939912..3940388 (-) Length   158 a.a.
NCBI ID   WP_074511801.1    Uniprot ID   -
Organism   Planococcus sp. N056     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3934912..3945388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY22_RS19440 (QWY22_19440) rplI 3936053..3936502 (-) 450 WP_220629586.1 50S ribosomal protein L9 -
  QWY22_RS19445 (QWY22_19445) - 3936499..3938475 (-) 1977 WP_300982419.1 DHH family phosphoesterase -
  QWY22_RS19450 (QWY22_19450) - 3938490..3939440 (-) 951 WP_300982420.1 YybS family protein -
  QWY22_RS19455 (QWY22_19455) rpsR 3939620..3939856 (-) 237 WP_036810891.1 30S ribosomal protein S18 -
  QWY22_RS19460 (QWY22_19460) ssbA 3939912..3940388 (-) 477 WP_074511801.1 single-stranded DNA-binding protein Machinery gene
  QWY22_RS19465 (QWY22_19465) rpsF 3940432..3940719 (-) 288 WP_074511803.1 30S ribosomal protein S6 -
  QWY22_RS19470 (QWY22_19470) - 3940894..3941454 (+) 561 WP_300982421.1 DUF3267 domain-containing protein -
  QWY22_RS19475 (QWY22_19475) - 3941475..3941861 (-) 387 WP_300982422.1 gamma-glutamylcyclotransferase -
  QWY22_RS19480 (QWY22_19480) ychF 3942124..3943224 (-) 1101 WP_300982423.1 redox-regulated ATPase YchF -
  QWY22_RS19485 (QWY22_19485) - 3943382..3943582 (-) 201 WP_036810873.1 DUF951 domain-containing protein -
  QWY22_RS19490 (QWY22_19490) - 3943624..3944433 (-) 810 WP_300984440.1 mechanosensitive ion channel family protein -
  QWY22_RS19495 (QWY22_19495) - 3944543..3945259 (-) 717 WP_300982424.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17370.00 Da        Isoelectric Point: 4.9327

>NTDB_id=851816 QWY22_RS19460 WP_074511801.1 3939912..3940388(-) (ssbA) [Planococcus sp. N056]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEKETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKNSGANADRSQGQQPSYQQNNQSPSQQNYTRVDQDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=851816 QWY22_RS19460 WP_074511801.1 3939912..3940388(-) (ssbA) [Planococcus sp. N056]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCTGATCTTCGCTATACTCCAAGCGGAGCGGCGGTGGC
CCGTTTTACACTTGCTGTAAACCGTACCTTCTCCAATGCGCAAGGCGAAAAGGAAACGGATTTTATCAATTGTACTGTTT
GGCGCAAACAAGCTGAAAACACAGCGAACTTCCTGAAAAAAGGAAGCTTGGCAGGTGTGGAAGGCCGCATTCAAACCGGA
AGCTACGAGGGACAAGACGGAAAACGCGTTTATACGACTGAAGTAGTCGCAGACAGTGTTCAATTCCTTGAACCGAAAAA
CTCTGGGGCTAATGCAGATCGTTCACAAGGACAACAGCCGTCCTATCAGCAGAACAATCAATCGCCAAGTCAGCAAAACT
ATACGCGTGTAGACCAGGATCCATTCTCAAGCGGCAGCGGCCCGATCGAAGTATCGGATGACGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.652
  ssb Latilactobacillus sakei subsp. sakei 23K

54.335

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.487

71.519

0.468
  ssb Neisseria gonorrhoeae MS11

35.465

100

0.386
  ssb Neisseria meningitidis MC58

34.884

100

0.38
  ssb Vibrio cholerae strain A1552

33.333

100

0.38
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.361