NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	LLUC029_RS09420	Genome accession	NZ_CP129163
Coordinates	1833303..1833902 (+)	Length	199 a.a.
NCBI ID	WP_011834647.1	Uniprot ID	A0A166TF89
Organism	Lactococcus cremoris strain UC029
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1828303..1838902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC029_RS09390 (LLUC029_09425)	-	1828866..1829012 (-)	147	WP_011675641.1	hypothetical protein	-
LLUC029_RS09395 (LLUC029_09430)	-	1829225..1830326 (-)	1102	Protein_1850	IS3-like element IS981 family transposase	-
LLUC029_RS09400 (LLUC029_09435)	-	1830464..1831627 (+)	1164	WP_063280878.1	hypothetical protein	-
LLUC029_RS09405 (LLUC029_09440)	-	1831724..1831858 (+)	135	WP_014572996.1	hypothetical protein	-
LLUC029_RS09410 (LLUC029_09445)	spx	1832009..1832407 (-)	399	WP_003129597.1	transcriptional regulator Spx	-
LLUC029_RS09415 (LLUC029_09450)	-	1832577..1833107 (-)	531	WP_032951437.1	hypothetical protein	-
LLUC029_RS09420 (LLUC029_09455)	clpP	1833303..1833902 (+)	600	WP_011834647.1	ATP-dependent Clp protease proteolytic subunit	Regulator
LLUC029_RS09425 (LLUC029_09460)	icd	1833942..1835180 (-)	1239	WP_032951436.1	NADP-dependent isocitrate dehydrogenase	-
LLUC029_RS09430 (LLUC029_09465)	acnA	1835200..1837746 (-)	2547	Protein_1857	aconitate hydratase AcnA	-

Sequence

Protein

Download Length: 199 a.a. Molecular weight: 22052.21 Da Isoelectric Point: 4.7423

                                >NTDB_id=851350 LLUC029_RS09420 WP_011834647.1 1833303..1833902(+) (clpP) [Lactococcus cremoris strain UC029]

MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD

TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN

SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide

Download Length: 600 bp

                                >NTDB_id=851350 LLUC029_RS09420 WP_011834647.1 1833303..1833902(+) (clpP) [Lactococcus cremoris strain UC029]

ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA

AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG

CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT

ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG

CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA

CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT

TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG

TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A166TF89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Lactococcus lactis subsp. cremoris KW2	100	100	1
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	99.497	100	0.995
clpP	Streptococcus mutans UA159	87.245	98.492	0.859
clpP	Streptococcus thermophilus LMD-9	86.735	98.492	0.854
clpP	Streptococcus thermophilus LMG 18311	86.735	98.492	0.854
clpP	Streptococcus pyogenes MGAS315	85.714	98.492	0.844
clpP	Streptococcus pyogenes JRS4	85.714	98.492	0.844
clpP	Streptococcus pneumoniae D39	84.615	97.99	0.829
clpP	Streptococcus pneumoniae TIGR4	84.615	97.99	0.829
clpP	Streptococcus pneumoniae R6	84.615	97.99	0.829
clpP	Streptococcus pneumoniae Rx1	84.615	97.99	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	95.477	0.553
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553

Detailed information NTG0851350