Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LLUC320_RS06680 Genome accession   NZ_CP129095
Coordinates   1300188..1301036 (-) Length   282 a.a.
NCBI ID   WP_081196627.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC320     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1295188..1306036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC320_RS06665 (LLUC320_06690) xerS 1295258..1296328 (+) 1071 WP_014572599.1 tyrosine recombinase XerS -
  LLUC320_RS06670 (LLUC320_06695) trmFO 1296378..1297724 (-) 1347 WP_081196628.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLUC320_RS06675 (LLUC320_06700) topA 1297796..1299922 (-) 2127 WP_015082465.1 type I DNA topoisomerase -
  LLUC320_RS06680 (LLUC320_06705) dprA 1300188..1301036 (-) 849 WP_081196627.1 DNA-processing protein DprA Machinery gene
  LLUC320_RS06685 (LLUC320_06710) - 1301185..1301565 (-) 381 WP_014572603.1 RidA family protein -
  LLUC320_RS06690 (LLUC320_06715) budA 1301605..1302315 (-) 711 WP_011676302.1 acetolactate decarboxylase -
  LLUC320_RS06695 (LLUC320_06720) ilvA 1302450..1303700 (-) 1251 WP_014572605.1 threonine ammonia-lyase IlvA -
  LLUC320_RS06700 (LLUC320_06725) ilvC 1303759..1304781 (-) 1023 WP_021211415.1 ketol-acid reductoisomerase -
  LLUC320_RS06705 (LLUC320_06730) ilvN 1304827..1305303 (-) 477 WP_021037263.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31924.12 Da        Isoelectric Point: 9.9799

>NTDB_id=850824 LLUC320_RS06680 WP_081196627.1 1300188..1301036(-) (dprA) [Lactococcus cremoris strain UC320]
MITNFDLFRWKKAGMTNLGVNKLLKFFRKYDIKISLRQMGQVAQVKSIPNFIEQYKNQDVKKLRIDYKKFSSFSILDDLY
PERLREIYNPPVLIFYQGNIDLLKNPKLAFVGSRLAGQSGIKAVQKIITELNQSFTIVSGLAKGIDTASHLSAIKTKTPT
IAVIGTGLDIFYPLENRKIQEYLAKNQLVLSEYSLGEKPLKYHFPERNRIIAGLSRGVVVVEAKLRSGSLITCERALEEG
RDIFAIPGNIADGKSDGCNHLIQQGAKLVYQAQDILEEYLYN

Nucleotide


Download         Length: 849 bp        

>NTDB_id=850824 LLUC320_RS06680 WP_081196627.1 1300188..1301036(-) (dprA) [Lactococcus cremoris strain UC320]
ATGATTACAAATTTTGATTTATTTCGTTGGAAAAAAGCAGGAATGACCAATCTTGGTGTAAATAAGCTCTTAAAATTTTT
CCGCAAATATGATATAAAAATAAGCTTACGACAAATGGGACAAGTGGCTCAAGTCAAATCAATCCCTAACTTTATCGAAC
AATATAAAAATCAGGACGTAAAGAAACTCAGGATAGACTATAAAAAATTTTCCTCCTTTTCCATTCTTGATGACCTTTAT
CCCGAGCGTCTAAGAGAAATCTACAACCCACCCGTTTTAATTTTTTATCAGGGAAATATTGATTTATTAAAAAATCCTAA
ACTTGCCTTTGTTGGAAGCCGCCTAGCAGGTCAATCAGGGATAAAAGCTGTCCAAAAAATTATCACAGAATTGAATCAAT
CCTTTACAATAGTAAGCGGGCTTGCTAAAGGGATTGACACAGCCAGCCATCTGTCAGCAATTAAAACTAAAACACCAACA
ATTGCTGTTATTGGTACAGGATTGGATATTTTCTATCCACTAGAAAATCGTAAAATACAGGAATATCTAGCAAAAAATCA
ATTAGTTTTAAGTGAATATTCATTAGGCGAAAAACCACTTAAATACCACTTTCCAGAGCGCAATCGAATTATTGCTGGTC
TTTCACGGGGAGTTGTTGTCGTGGAAGCAAAATTAAGAAGTGGCAGTTTAATCACCTGTGAAAGGGCACTGGAAGAAGGA
AGAGATATCTTTGCCATCCCTGGAAATATTGCAGATGGAAAATCTGATGGCTGTAATCATCTTATTCAACAAGGAGCAAA
ACTTGTCTATCAAGCTCAAGATATTTTAGAAGAATATTTGTACAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-270)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Lactococcus lactis subsp. cremoris KW2

97.872

100

0.979
  dprA Streptococcus mutans UA159

59.353

98.582

0.585
  dprA/cilB/dalA Streptococcus mitis SK321

56.071

99.291

0.557
  dprA/cilB/dalA Streptococcus pneumoniae R6

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus pneumoniae D39

55.714

99.291

0.553
  dprA Vibrio campbellii strain DS40M4

35.644

100

0.383
  dprA Bacillus subtilis subsp. subtilis str. 168

39.273

97.518

0.383
  dprA Legionella pneumophila strain ERS1305867

39.13

97.872

0.383
  dprA Haemophilus influenzae Rd KW20

39.63

95.745

0.379