Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LLUC310_RS07035 Genome accession   NZ_CP129094
Coordinates   1241479..1242327 (-) Length   282 a.a.
NCBI ID   WP_063284000.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC310     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1236479..1247327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC310_RS07020 (LLUC310_07070) xerS 1236549..1237619 (+) 1071 WP_260361923.1 tyrosine recombinase XerS -
  LLUC310_RS07025 (LLUC310_07075) trmFO 1237669..1239015 (-) 1347 WP_081196628.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLUC310_RS07030 (LLUC310_07080) topA 1239087..1241213 (-) 2127 WP_015082465.1 type I DNA topoisomerase -
  LLUC310_RS07035 (LLUC310_07085) dprA 1241479..1242327 (-) 849 WP_063284000.1 DNA-processing protein DprA Machinery gene
  LLUC310_RS07040 (LLUC310_07090) - 1242476..1242856 (-) 381 WP_014572603.1 RidA family protein -
  LLUC310_RS07045 (LLUC310_07095) budA 1242896..1243606 (-) 711 WP_011676302.1 acetolactate decarboxylase -
  LLUC310_RS07050 (LLUC310_07100) ilvA 1243741..1244991 (-) 1251 WP_014572605.1 threonine ammonia-lyase IlvA -
  LLUC310_RS07055 (LLUC310_07105) ilvC 1245050..1246072 (-) 1023 WP_021211415.1 ketol-acid reductoisomerase -
  LLUC310_RS07060 (LLUC310_07110) ilvN 1246118..1246594 (-) 477 WP_021037263.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31897.05 Da        Isoelectric Point: 9.9168

>NTDB_id=850780 LLUC310_RS07035 WP_063284000.1 1241479..1242327(-) (dprA) [Lactococcus cremoris strain UC310]
MITNFDLFRWKKAGMTNLGVNKLLKFFRKYDIKISLRQMGQVAQVKSIPNFIEQYKNQDVKKLRIDYKKFSSFSILDDLY
PERLREIYNPPVLIFYQGNIDLLKNPKLAFVGSRLAGQSGIKAVQKIITELNQSFTIVSGLAKGIDTASHLSAIKTKTPT
IAVIGTGLDIFYPLENRKIQEYLAKNQLVLSEYSLGEKPLKYHFPERNRIIAGLSRGVVVVEAKLRSGSLITCERALEEG
RDIFAIPGNIADGTSDGCNHLIQQGAKLVYQAQDILEEYLYN

Nucleotide


Download         Length: 849 bp        

>NTDB_id=850780 LLUC310_RS07035 WP_063284000.1 1241479..1242327(-) (dprA) [Lactococcus cremoris strain UC310]
ATGATTACAAATTTTGATTTATTTCGTTGGAAAAAAGCAGGAATGACCAATCTTGGTGTAAATAAGCTCTTAAAATTTTT
CCGCAAATATGATATAAAAATAAGCTTACGACAAATGGGACAAGTGGCTCAAGTCAAATCAATCCCTAACTTTATCGAAC
AATATAAAAATCAGGACGTAAAGAAACTCAGGATAGACTATAAAAAATTTTCCTCCTTTTCCATTCTTGATGACCTTTAT
CCCGAGCGTCTAAGAGAAATCTACAACCCACCCGTTTTAATTTTTTATCAGGGAAATATTGATTTATTAAAAAATCCTAA
ACTTGCCTTTGTTGGAAGCCGCCTAGCAGGTCAATCAGGGATAAAAGCTGTCCAAAAAATTATCACAGAATTGAATCAAT
CCTTTACAATAGTAAGCGGGCTTGCTAAAGGGATTGACACAGCCAGCCATCTGTCAGCAATTAAAACTAAAACACCAACA
ATTGCTGTTATTGGTACAGGATTGGATATTTTCTATCCACTAGAAAATCGTAAAATACAGGAATATCTAGCAAAAAATCA
ATTAGTTTTAAGTGAATATTCATTAGGCGAAAAACCACTTAAATACCACTTTCCAGAGCGCAATCGAATTATTGCTGGTC
TTTCACGGGGAGTTGTTGTCGTGGAAGCAAAATTAAGAAGTGGCAGTTTAATCACCTGTGAAAGGGCACTGGAAGAAGGA
AGAGATATCTTTGCCATCCCTGGAAATATTGCAGATGGAACATCTGATGGCTGTAATCATCTTATTCAACAAGGAGCAAA
ACTTGTCTATCAAGCTCAAGATATTTTAGAAGAATATTTGTACAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-270)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Lactococcus lactis subsp. cremoris KW2

98.227

100

0.982
  dprA Streptococcus mutans UA159

59.353

98.582

0.585
  dprA/cilB/dalA Streptococcus mitis SK321

56.071

99.291

0.557
  dprA/cilB/dalA Streptococcus pneumoniae D39

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus pneumoniae R6

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

55.714

99.291

0.553
  dprA Vibrio campbellii strain DS40M4

35.644

100

0.383
  dprA Bacillus subtilis subsp. subtilis str. 168

39.273

97.518

0.383
  dprA Legionella pneumophila strain ERS1305867

39.13

97.872

0.383
  dprA Haemophilus influenzae Rd KW20

39.63

95.745

0.379