Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRA04_RS13700 Genome accession   NZ_CP128608
Coordinates   2648698..2649279 (+) Length   193 a.a.
NCBI ID   WP_410491063.1    Uniprot ID   -
Organism   Bacillus tropicus strain PUMB_55     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2635109..2649279 2648698..2649279 within 0


Gene organization within MGE regions


Location: 2635109..2649279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA04_RS13610 (QRA04_13585) - 2635109..2635885 (+) 777 WP_226639399.1 serine hydrolase -
  QRA04_RS13615 (QRA04_13590) - 2635882..2636253 (+) 372 WP_061402936.1 hypothetical protein -
  QRA04_RS13620 (QRA04_13595) - 2636286..2636702 (+) 417 WP_000809322.1 GNAT family N-acetyltransferase -
  QRA04_RS13625 (QRA04_13600) - 2636979..2637785 (+) 807 WP_242275104.1 N-acetylmuramoyl-L-alanine amidase C-terminal domain-containing protein -
  QRA04_RS13630 (QRA04_13605) - 2637796..2638059 (-) 264 WP_410491061.1 DUF3006 domain-containing protein -
  QRA04_RS13635 (QRA04_13610) - 2638062..2639445 (-) 1384 Protein_2687 S-layer homology domain-containing protein -
  QRA04_RS13640 (QRA04_13615) - 2639876..2640283 (+) 408 WP_226639393.1 GNAT family N-acetyltransferase -
  QRA04_RS13645 (QRA04_13620) - 2640297..2640650 (+) 354 WP_000648514.1 MmcQ/YjbR family DNA-binding protein -
  QRA04_RS13650 (QRA04_13625) - 2640672..2641379 (+) 708 WP_226639391.1 class I SAM-dependent methyltransferase -
  QRA04_RS13655 (QRA04_13630) - 2641445..2641831 (+) 387 WP_061658704.1 DUF2809 domain-containing protein -
  QRA04_RS13660 (QRA04_13635) - 2641853..2642356 (+) 504 WP_074562440.1 DNA topology modulation protein -
  QRA04_RS13665 (QRA04_13640) - 2642503..2643183 (+) 681 WP_226639389.1 formylglycine-generating enzyme family protein -
  QRA04_RS13670 (QRA04_13645) - 2643269..2644462 (+) 1194 WP_242275106.1 macrolide family glycosyltransferase -
  QRA04_RS13675 (QRA04_13650) - 2644820..2646187 (+) 1368 WP_242275107.1 lytic polysaccharide monooxygenase -
  QRA04_RS13680 (QRA04_13655) - 2646318..2646752 (-) 435 WP_410491062.1 GNAT family N-acetyltransferase -
  QRA04_RS13685 (QRA04_13660) rpiA 2646859..2647521 (-) 663 WP_242275108.1 ribose 5-phosphate isomerase A -
  QRA04_RS13690 (QRA04_13665) - 2647526..2647846 (-) 321 WP_001125388.1 2Fe-2S iron-sulfur cluster-binding protein -
  QRA04_RS13695 (QRA04_13670) - 2647990..2648676 (+) 687 WP_226639382.1 RNA polymerase subunit sigma-70 -
  QRA04_RS13700 (QRA04_13675) clpP 2648698..2649279 (+) 582 WP_410491063.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21222.52 Da        Isoelectric Point: 5.3394

>NTDB_id=849287 QRA04_RS13700 WP_410491063.1 2648698..2649279(+) (clpP) [Bacillus tropicus strain PUMB_55]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVTSSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=849287 QRA04_RS13700 WP_410491063.1 2648698..2649279(+) (clpP) [Bacillus tropicus strain PUMB_55]
ATGAATGCAATTCCATATGTAGTGGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGTATTATTATTATCGGTTCAGAAATAAATGATCAAGTAACGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCCGGCGGATCAACGACAGCGGGATTTGCTATATTAGATACA
ATGAATTTAATTAAACCTGATGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCAAAAGGGCAGGCAA
CAGAAATTGAAATAACAGCAAAAAGGATATTGAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACGGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCAAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pneumoniae Rx1

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus pneumoniae D39

54.688

99.482

0.544
  clpP Streptococcus pneumoniae R6

54.688

99.482

0.544
  clpP Streptococcus pneumoniae TIGR4

54.688

99.482

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

97.927

0.503
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487