Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V4939_RS10100 Genome accession   NZ_CP144733
Coordinates   2183365..2183985 (+) Length   206 a.a.
NCBI ID   WP_041807539.1    Uniprot ID   -
Organism   Azotobacter vinelandii DJ     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2178365..2188985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4939_RS10070 (V4939_10070) cysS 2178887..2180272 (+) 1386 WP_012700939.1 cysteine--tRNA ligase -
  V4939_RS10075 (V4939_10075) folD 2180364..2181218 (-) 855 WP_012700940.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  V4939_RS10095 (V4939_10095) tig 2181950..2183260 (+) 1311 WP_012700941.1 trigger factor -
  V4939_RS10100 (V4939_10100) clpP 2183365..2183985 (+) 621 WP_041807539.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  V4939_RS10105 (V4939_10105) clpX 2184088..2185368 (+) 1281 WP_012700944.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V4939_RS10110 (V4939_10110) lon 2185495..2187891 (+) 2397 WP_085930850.1 endopeptidase La -
  V4939_RS10115 (V4939_10115) hupB 2188027..2188299 (+) 273 WP_012700946.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22867.47 Da        Isoelectric Point: 6.1392

>NTDB_id=847542 V4939_RS10100 WP_041807539.1 2183365..2183985(+) (clpP) [Azotobacter vinelandii DJ]
MQMPEIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPDKDIHLYINSPGGSV
TAGMSIYDTMQFIKPDVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTIRERLN
KILAHHTGQPIDVIARDTDRDNFMSGEEAVKYRLIDQVLVHRQLVS

Nucleotide


Download         Length: 621 bp        

>NTDB_id=847542 V4939_RS10100 WP_041807539.1 2183365..2183985(+) (clpP) [Azotobacter vinelandii DJ]
ATGCAAATGCCTGAAATCCAGGCCGCTGGTGGCCTGGTACCGATGGTGATCGAACAGTCCGCTCGCGGTGAGCGTGCTTA
CGATATTTATTCGCGTCTCTTGAAGGAGCGAGTAATATTCATGGTTGGCCAAGTAGAAGACTACATGGCGAACTTGATTG
TCGCTCAGTTGTTGTTCCTTGAGGCCGAGAATCCCGACAAGGATATTCACCTTTACATCAATTCGCCTGGTGGCTCCGTG
ACGGCAGGCATGTCCATCTACGACACCATGCAGTTCATCAAGCCTGACGTTTCCACCATTTGTATTGGCCAGGCCTGCAG
CATGGGAGCCTTGTTGCTGGCCGGTGGCGCCGCCGGAAAGCGTTACTGCCTCCCGCATTCGCGGATGATGATTCACCAGC
CTTTGGGGGGGTTCCAGGGGCAGGCTTCGGACATCGAGATCCACGCCCGGGAGATTCTCACCATTCGCGAGCGTCTGAAC
AAGATTCTGGCGCATCACACTGGGCAGCCCATCGATGTGATCGCTCGTGACACGGATCGTGACAATTTCATGAGTGGTGA
GGAAGCGGTCAAGTATCGCCTCATCGATCAGGTTCTCGTGCACCGCCAACTGGTGAGTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(22-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.229

93.204

0.636
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

91.262

0.602
  clpP Lactococcus lactis subsp. cremoris KW2

52.792

95.631

0.505
  clpP Streptococcus mutans UA159

50.99

98.058

0.5
  clpP Streptococcus pyogenes MGAS315

51.795

94.66

0.49
  clpP Streptococcus thermophilus LMG 18311

51.795

94.66

0.49
  clpP Streptococcus thermophilus LMD-9

51.795

94.66

0.49
  clpP Streptococcus pyogenes JRS4

51.795

94.66

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.269

95.631

0.49
  clpP Streptococcus pneumoniae TIGR4

51.282

94.66

0.485
  clpP Streptococcus pneumoniae R6

51.282

94.66

0.485
  clpP Streptococcus pneumoniae D39

51.282

94.66

0.485
  clpP Streptococcus pneumoniae Rx1

51.282

94.66

0.485