Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V4942_RS01285 Genome accession   NZ_CP144687
Coordinates   238258..238842 (+) Length   194 a.a.
NCBI ID   WP_008631995.1    Uniprot ID   Q72L15
Organism   Thermus thermophilus strain TTHB27_delta_cmr4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 233258..243842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4942_RS01265 (V4942_01265) - 236416..236700 (+) 285 WP_008631991.1 rhodanese-like domain-containing protein -
  V4942_RS01280 (V4942_01280) tig 236978..238192 (+) 1215 WP_011172700.1 trigger factor -
  V4942_RS01285 (V4942_01285) clpP 238258..238842 (+) 585 WP_008631995.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  V4942_RS01290 (V4942_01290) clpX 238829..240028 (+) 1200 WP_011172702.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  V4942_RS01295 (V4942_01295) - 240055..241575 (-) 1521 WP_011172703.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21392.71 Da        Isoelectric Point: 5.3092

>NTDB_id=847372 V4942_RS01285 WP_008631995.1 238258..238842(+) (clpP) [Thermus thermophilus strain TTHB27_delta_cmr4]
MVIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVDAGLAIYDTM
QFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQP
LEKVEKDTDRDYYLSAQEALEYGLIDQVVTREEA

Nucleotide


Download         Length: 585 bp        

>NTDB_id=847372 V4942_RS01285 WP_008631995.1 238258..238842(+) (clpP) [Thermus thermophilus strain TTHB27_delta_cmr4]
ATGGTCATACCCTACGTCATTGAGCAGACGGCCCGCGGCGAGCGCGTCTACGACATCTACTCCCGCCTCCTCAAGGACCG
CATCATCTTCCTGGGCACCCCCATAGACGCCCAGGTGGCCAACGTGGTGGTGGCCCAGCTCCTCTTCCTGGACGCCCAGA
ACCCCAACCAGGAGATCAAGCTCTACATCAACTCCCCCGGGGGCGAGGTGGACGCGGGCCTCGCCATCTACGACACCATG
CAGTTCGTCCGGGCCCCCGTGTCCACCATCGTCATCGGCATGGCGGCCAGCATGGCCGCGGTGATCCTGGCGGCGGGGGA
GAAGGGCCGCCGCTACGCCCTTCCCCACGCCAAGGTCATGATCCACCAGCCCTGGGGTGGGGTGCGGGGGACGGCGAGCG
ACATCGCCATCCAGGCCCAGGAGATCCTGAAGGCGAAGAAACTCCTCAACGAGATCCTGGCCAAGCACACCGGCCAGCCC
CTGGAGAAGGTGGAGAAGGACACGGACCGGGACTACTACCTCTCGGCCCAGGAGGCCCTGGAGTACGGCCTCATTGACCA
GGTGGTGACCCGTGAAGAGGCCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(12-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72L15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

66.146

98.969

0.655
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.162

98.454

0.582
  clpP Streptococcus thermophilus LMG 18311

56.186

100

0.562
  clpP Streptococcus thermophilus LMD-9

56.186

100

0.562
  clpP Streptococcus pneumoniae R6

57.368

97.938

0.562
  clpP Streptococcus pneumoniae Rx1

57.368

97.938

0.562
  clpP Streptococcus pneumoniae D39

57.368

97.938

0.562
  clpP Streptococcus pneumoniae TIGR4

57.368

97.938

0.562
  clpP Streptococcus pyogenes JRS4

54.639

100

0.546
  clpP Streptococcus pyogenes MGAS315

54.639

100

0.546
  clpP Lactococcus lactis subsp. cremoris KW2

54.211

97.938

0.531
  clpP Streptococcus mutans UA159

53.093

100

0.531
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.632

97.938

0.515