Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   QSV38_RS08120 Genome accession   NZ_CP128410
Coordinates   1550810..1552777 (+) Length   655 a.a.
NCBI ID   WP_277837439.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545810..1557777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS08105 (QSV38_08105) sufU 1546996..1547436 (+) 441 WP_217374209.1 Fe-S cluster assembly sulfur transfer protein SufU -
  QSV38_RS08110 (QSV38_08110) sufB 1547633..1549048 (+) 1416 WP_289648129.1 Fe-S cluster assembly protein SufB -
  QSV38_RS08115 (QSV38_08115) pbp3 1549355..1550596 (-) 1242 WP_289648131.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  QSV38_RS08120 (QSV38_08120) amiA 1550810..1552777 (+) 1968 WP_277837439.1 peptide ABC transporter substrate-binding protein Regulator
  QSV38_RS08125 (QSV38_08125) amiC 1552855..1554354 (+) 1500 WP_274504253.1 ABC transporter permease Regulator
  QSV38_RS08130 (QSV38_08130) amiD 1554354..1555280 (+) 927 WP_289649349.1 oligopeptide ABC transporter permease OppC Regulator
  QSV38_RS08135 (QSV38_08135) amiE 1555290..1556354 (+) 1065 WP_289648135.1 ABC transporter ATP-binding protein Regulator
  QSV38_RS08140 (QSV38_08140) amiF 1556364..1557287 (+) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72750.42 Da        Isoelectric Point: 4.2350

>NTDB_id=847335 QSV38_RS08120 WP_277837439.1 1550810..1552777(+) (amiA) [Streptococcus parasuis strain 7500]
MKRNKLFALAGITLLSASFLVACGSNSSSNSETSTTYSYVYTEDPTSLDYIAYNRAQISDIVTNMVDGLLENDKYGNLIP
SLAEDWKVSKDGLTYTYTLREGVKWYTAEGEEYADVTANDFVTAIKHAVDTQSEGLYIIQDSIAGLDDYVNGKTSDFETV
GVKALDDRTVQYTLSHPEPYWNSKLTMSIMLPVNAEFLESKGEDFGKVEPDGILYNGAYFISAMTSKSSLEYTKNENYWD
ADNVKIENVKLTYYDGQDPESLVRGFTDGIYSNARIYPNSSSYSSVKEQYADNITYSLQDATVYFTTLNLNRSNYGHTAK
TTDVQKESARKALLNKDFRQAFTFAFNRQDYLAQSVGEDAADKPLRNLLVPPTFVSAGEKSFGDLVSEKVISYGDEWADV
DFSDAQNGLYNVDKAKVEFEKAKQTLSAEGVEFPIHLDMPVNQSSEVSTQQAASLKQSVEAALGTENIVIDLQMMDTDTF
TNAAFYTETPDQNDYDITYSGWGPDYQDPSTYLDILETTSGAMTSKLGIDSSTTDVIKTVGLDKYDALLKEASDEKLDVV
KRYEKYAEAQAWLTDSAIVIPYMSLGGTPSVSKVIPYTASTSDVGIKGSGSFYKYMEVGTEVNKAKDVYAKREKWLKEKA
ESNAKAQEELANHVE

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=847335 QSV38_RS08120 WP_277837439.1 1550810..1552777(+) (amiA) [Streptococcus parasuis strain 7500]
ATGAAACGAAATAAATTGTTTGCATTAGCAGGTATTACTCTGCTGTCAGCCTCGTTCTTGGTTGCATGTGGTTCCAATTC
TAGCTCAAATTCTGAAACTAGTACAACTTATTCGTATGTTTATACTGAAGATCCAACTTCTTTAGATTACATTGCTTATA
ACCGTGCGCAAATTTCTGATATTGTTACTAATATGGTGGATGGTTTGTTAGAGAATGATAAGTACGGTAACTTAATCCCC
TCTCTTGCTGAAGATTGGAAGGTTTCAAAAGATGGTTTAACATATACTTATACTCTTCGTGAGGGCGTAAAATGGTATAC
AGCTGAAGGTGAAGAATATGCTGACGTGACAGCAAATGACTTTGTAACAGCTATTAAACATGCTGTGGATACACAGTCTG
AAGGTTTATATATTATCCAAGATTCAATTGCTGGTTTAGATGACTATGTTAACGGTAAAACAAGTGACTTTGAAACTGTT
GGTGTTAAGGCTTTAGATGACCGTACTGTTCAGTATACTTTGAGCCATCCAGAACCATATTGGAACTCAAAGTTAACCAT
GTCAATCATGTTGCCTGTAAATGCGGAATTCTTAGAATCAAAAGGTGAAGACTTTGGTAAAGTAGAGCCAGATGGAATTC
TTTACAATGGTGCATACTTTATTAGTGCAATGACATCTAAATCTTCACTTGAATATACAAAGAATGAAAACTACTGGGAT
GCCGACAATGTTAAAATTGAGAATGTTAAGTTAACATATTATGATGGGCAAGATCCAGAATCTTTGGTAAGGGGCTTCAC
GGATGGAATCTATTCTAATGCTCGAATATATCCAAATTCGTCTAGCTATTCATCTGTTAAAGAACAATATGCTGATAACA
TCACTTATAGCCTTCAAGATGCAACAGTATATTTCACTACTTTGAACTTAAATCGTTCAAACTATGGTCATACTGCAAAA
ACAACAGATGTTCAGAAAGAATCAGCTAGAAAAGCATTATTAAATAAAGATTTTCGTCAAGCCTTTACTTTCGCATTTAA
CCGCCAAGATTACTTAGCACAATCAGTTGGTGAGGACGCTGCAGATAAGCCATTACGCAACTTGTTAGTTCCTCCTACTT
TTGTAAGTGCAGGCGAAAAATCATTTGGTGATTTAGTAAGTGAAAAAGTAATCTCATACGGAGATGAGTGGGCAGATGTA
GATTTCTCTGATGCTCAAAATGGGCTTTACAACGTTGATAAGGCAAAAGTTGAATTTGAAAAGGCAAAACAAACACTTTC
TGCTGAAGGAGTTGAATTCCCTATTCACTTAGATATGCCAGTTAACCAAAGTAGTGAGGTTAGTACACAACAAGCTGCTT
CATTGAAACAGTCTGTTGAAGCGGCATTAGGCACTGAAAATATTGTAATTGATCTTCAAATGATGGATACAGATACGTTT
ACAAACGCAGCTTTCTACACTGAAACACCCGATCAAAATGATTATGACATTACATACAGTGGATGGGGTCCTGACTACCA
AGATCCGTCTACCTACCTTGATATATTAGAAACAACATCTGGTGCGATGACTAGCAAGTTGGGTATTGATTCAAGTACGA
CTGATGTGATTAAAACAGTTGGGCTAGACAAATACGACGCGCTTCTTAAAGAAGCTTCTGATGAAAAACTTGATGTTGTA
AAACGATATGAAAAATATGCCGAAGCTCAAGCTTGGTTAACTGATAGCGCGATTGTAATCCCGTATATGTCATTAGGCGG
TACTCCTAGTGTATCTAAGGTTATTCCTTACACAGCATCTACGTCTGATGTTGGTATCAAAGGCAGTGGCTCATTCTACA
AATATATGGAAGTGGGCACTGAAGTAAACAAGGCAAAAGATGTTTACGCTAAGCGTGAAAAATGGTTAAAAGAAAAAGCT
GAGTCAAATGCTAAAGCTCAAGAAGAACTTGCTAACCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.628

100

0.55
  amiA3 Streptococcus thermophilus LMD-9

53.788

100

0.542
  amiA3 Streptococcus thermophilus LMG 18311

53.636

100

0.54