Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   QSV38_RS08140 Genome accession   NZ_CP128410
Coordinates   1556364..1557287 (+) Length   307 a.a.
NCBI ID   WP_274504251.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551364..1562287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS08125 (QSV38_08125) amiC 1552855..1554354 (+) 1500 WP_274504253.1 ABC transporter permease Regulator
  QSV38_RS08130 (QSV38_08130) amiD 1554354..1555280 (+) 927 WP_289649349.1 oligopeptide ABC transporter permease OppC Regulator
  QSV38_RS08135 (QSV38_08135) amiE 1555290..1556354 (+) 1065 WP_289648135.1 ABC transporter ATP-binding protein Regulator
  QSV38_RS08140 (QSV38_08140) amiF 1556364..1557287 (+) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator
  QSV38_RS08145 (QSV38_08145) thrC 1557499..1558983 (+) 1485 WP_217374203.1 threonine synthase -
  QSV38_RS08150 (QSV38_08150) - 1559087..1560355 (+) 1269 WP_289648138.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34735.05 Da        Isoelectric Point: 7.2523

>NTDB_id=847339 QSV38_RS08140 WP_274504251.1 1556364..1557287(+) (amiF) [Streptococcus parasuis strain 7500]
MTEKLVEIKDLEISFGEGRKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIRLNETSGGDILYNGEKINGKISHE
KSRELIKKIQMIFQDPAASLNERATVDYIISEGLYNFKLFKNEEERQAKVRSMMTEVGLLAEHLTRFPHEFSGGQRQRIG
IARALVMNPELVIADEPISALDVSVRAQVLNLLKRLQKELGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFK
NPLHPYTRSLLSAVPIPDPILERQKTLVVYDPNMHDYSVDKPEMHEIKPGHFVWSNKAEFAKYSEGI

Nucleotide


Download         Length: 924 bp        

>NTDB_id=847339 QSV38_RS08140 WP_274504251.1 1556364..1557287(+) (amiF) [Streptococcus parasuis strain 7500]
ATGACTGAAAAATTAGTTGAAATCAAAGATTTAGAAATTTCTTTCGGTGAAGGGCGCAAAAAATTTGTAGCTGTCAAAAA
TGCTAATTTCTTTATTAATCGTGGAGAAACATTCTCCTTAGTTGGAGAATCGGGGTCTGGTAAGACAACGATTGGTCGTG
CGATAATTAGACTAAATGAAACAAGTGGTGGAGATATTCTTTATAATGGAGAGAAAATAAATGGGAAAATTTCTCATGAG
AAGTCTCGAGAATTAATTAAGAAAATTCAAATGATTTTTCAAGATCCAGCAGCGAGTTTGAATGAACGTGCAACAGTAGA
CTATATTATCTCTGAGGGCTTGTACAATTTTAAATTGTTTAAGAATGAAGAAGAGCGGCAAGCAAAAGTTCGGTCAATGA
TGACAGAAGTGGGGCTACTTGCGGAACACTTAACACGCTTTCCTCATGAGTTCTCAGGAGGCCAACGCCAGAGGATAGGT
ATAGCTCGAGCACTTGTGATGAATCCTGAATTGGTGATTGCCGATGAACCGATTTCTGCATTAGATGTGTCTGTTAGAGC
TCAAGTCTTAAATTTATTGAAGAGATTGCAAAAAGAACTGGGCTTAACTTATCTCTTTATTGCACATGATTTGTCAGTTG
TTCGGTTTATTTCTGATAGGATTGCAGTGATTCATAAAGGTGTTATTGTAGAAGTGGCAGAAACAGAGGAATTGTTTAAG
AATCCTTTGCATCCATACACTCGTTCCTTACTATCTGCTGTTCCTATTCCGGATCCAATTTTAGAAAGACAAAAAACTTT
AGTAGTATATGATCCAAATATGCATGATTATTCTGTAGATAAGCCAGAAATGCATGAAATCAAGCCAGGTCATTTTGTAT
GGTCAAATAAAGCAGAATTTGCAAAATATTCAGAAGGCATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

80.858

98.697

0.798
  amiF Streptococcus thermophilus LMD-9

80.528

98.697

0.795
  amiF Streptococcus salivarius strain HSISS4

80.198

98.697

0.792