Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QSV38_RS08135 Genome accession   NZ_CP128410
Coordinates   1555290..1556354 (+) Length   354 a.a.
NCBI ID   WP_289648135.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1550290..1561354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS08120 (QSV38_08120) amiA 1550810..1552777 (+) 1968 WP_277837439.1 peptide ABC transporter substrate-binding protein Regulator
  QSV38_RS08125 (QSV38_08125) amiC 1552855..1554354 (+) 1500 WP_274504253.1 ABC transporter permease Regulator
  QSV38_RS08130 (QSV38_08130) amiD 1554354..1555280 (+) 927 WP_289649349.1 oligopeptide ABC transporter permease OppC Regulator
  QSV38_RS08135 (QSV38_08135) amiE 1555290..1556354 (+) 1065 WP_289648135.1 ABC transporter ATP-binding protein Regulator
  QSV38_RS08140 (QSV38_08140) amiF 1556364..1557287 (+) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator
  QSV38_RS08145 (QSV38_08145) thrC 1557499..1558983 (+) 1485 WP_217374203.1 threonine synthase -
  QSV38_RS08150 (QSV38_08150) - 1559087..1560355 (+) 1269 WP_289648138.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39511.41 Da        Isoelectric Point: 4.8911

>NTDB_id=847338 QSV38_RS08135 WP_289648135.1 1555290..1556354(+) (amiE) [Streptococcus parasuis strain 7500]
MAEKNNVILSAKDVVVEFEVRDRVLTAIRNVSIDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRIASGSIIYRGEEL
TDIKKHEEWEKIRGAKIATIFQDPMTSLNPLVTIGRQITEVIVKHQGKSISEAKELAVNYMERVGIPDAKKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQILDLLKELQKEYNFTTIFITHDLGVVASIADKVAVMYAGEVIE
FGTVEDIFYDPRHPYTWSLLSSLPQLANFNGELFSIPGTPPSLFTPVLGDAFASRSEFAMQVDFEESPPIFQVTENHWAK
TWLLHPEAPKATKPEVIQDLHSKIKSKMSVEDIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=847338 QSV38_RS08135 WP_289648135.1 1555290..1556354(+) (amiE) [Streptococcus parasuis strain 7500]
ATGGCAGAAAAAAACAATGTAATATTATCCGCAAAAGATGTGGTCGTGGAATTTGAAGTTCGTGACCGTGTTTTGACAGC
TATACGTAATGTCTCTATAGATTTAATCGAGGGAGAGGTTCTCGCAATTGTAGGGGAGTCTGGTTCTGGAAAGTCAGTTT
TGACAAAAACTTTCACAGGGATGCTGGAAGAGAATGGACGAATTGCTTCAGGAAGTATTATTTATCGTGGAGAAGAATTA
ACTGATATAAAAAAACATGAAGAATGGGAAAAAATACGTGGTGCAAAAATTGCAACTATTTTCCAGGATCCAATGACAAG
TCTTAATCCTTTGGTTACAATTGGCCGCCAAATTACCGAAGTTATCGTTAAACATCAAGGAAAATCAATTTCTGAGGCAA
AAGAACTTGCAGTTAATTATATGGAACGAGTGGGTATTCCAGATGCAAAAAAACGTTTCAATGAATACCCGTTTCAATAT
TCAGGTGGTATGCGACAAAGAATTGTTATTGCAATTGCCTTAGCATGCCGTCCAGATGTATTAATTTGTGATGAACCAAC
AACAGCATTAGATGTAACAATACAAGCTCAAATTTTAGACTTATTAAAAGAATTACAAAAAGAATACAATTTTACAACAA
TTTTCATCACGCATGATTTGGGTGTTGTTGCAAGCATCGCTGACAAAGTTGCTGTTATGTATGCTGGCGAAGTTATTGAA
TTTGGAACTGTAGAAGACATCTTTTATGACCCTCGACATCCATATACATGGAGTCTACTTTCAAGTCTTCCTCAGTTAGC
CAATTTTAATGGAGAACTCTTTTCAATTCCAGGAACACCTCCTTCACTTTTCACTCCGGTCTTAGGAGATGCATTTGCAT
CTCGTTCTGAATTCGCGATGCAGGTTGATTTTGAAGAATCTCCACCTATTTTTCAAGTTACAGAAAATCATTGGGCTAAA
ACTTGGTTATTACACCCTGAAGCTCCTAAAGCGACCAAACCAGAAGTGATTCAGGATTTACATTCAAAAATTAAATCTAA
GATGTCAGTAGAAGATATTAAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.797

98.588

0.777
  amiE Streptococcus thermophilus LMG 18311

78.51

98.588

0.774
  amiE Streptococcus thermophilus LMD-9

78.51

98.588

0.774
  oppD Streptococcus mutans UA159

55.752

95.763

0.534