Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   QSV38_RS08125 Genome accession   NZ_CP128410
Coordinates   1552855..1554354 (+) Length   499 a.a.
NCBI ID   WP_274504253.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547855..1559354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS08115 (QSV38_08115) pbp3 1549355..1550596 (-) 1242 WP_289648131.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  QSV38_RS08120 (QSV38_08120) amiA 1550810..1552777 (+) 1968 WP_277837439.1 peptide ABC transporter substrate-binding protein Regulator
  QSV38_RS08125 (QSV38_08125) amiC 1552855..1554354 (+) 1500 WP_274504253.1 ABC transporter permease Regulator
  QSV38_RS08130 (QSV38_08130) amiD 1554354..1555280 (+) 927 WP_289649349.1 oligopeptide ABC transporter permease OppC Regulator
  QSV38_RS08135 (QSV38_08135) amiE 1555290..1556354 (+) 1065 WP_289648135.1 ABC transporter ATP-binding protein Regulator
  QSV38_RS08140 (QSV38_08140) amiF 1556364..1557287 (+) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator
  QSV38_RS08145 (QSV38_08145) thrC 1557499..1558983 (+) 1485 WP_217374203.1 threonine synthase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56475.35 Da        Isoelectric Point: 8.1135

>NTDB_id=847336 QSV38_RS08125 WP_274504253.1 1552855..1554354(+) (amiC) [Streptococcus parasuis strain 7500]
MKKYVFKRVLRSLFSLFMVTTLIYSIIYTMVPRKKIFEKDATYTKMAKDPDSKTDYVNTVYEKMGYIEYLNPKELQEAAV
EVDSSVTVEPTDTNKKIYEEYVLKLGKNWVLHQFEGSQSIYATREIPIYERVIDFYGNMFEFDHVNKVQDPENPDLERYI
RFENDPAIGWSLVGSGTEHKYLLYFNSQFPFIHQNFVNLNLGVSYPTYANVEVLDVLTNGQGKTISTDVTFPTGEVKKSS
IDIYSRTYKSPSVADAKDKANFGDDPYTATKSRYKDPSMIVNSSIIGLISVFITYILGIPLGILMARFKNKGFDVVTTAI
FSFLMALPSIAFIYIFRFAFGQIFNLPDTFPVLGASDPRSYLFPAVLLGLLSTPWTAIWIRRYFIDLQNSDYVRFARAKG
LSESEISRTHIFRNAMVPVIHSVPAAIVGVIVGATFTESVFAFPGMGKMLIDSINVSNNNMVVALSFIFAGINIFALLLG
DLLMTLVDPRIKLDVKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=847336 QSV38_RS08125 WP_274504253.1 1552855..1554354(+) (amiC) [Streptococcus parasuis strain 7500]
ATGAAAAAGTATGTTTTCAAACGTGTCCTACGTTCGTTATTCTCTCTTTTTATGGTTACCACTTTGATTTATTCGATCAT
TTATACAATGGTTCCTAGAAAGAAAATTTTTGAAAAGGATGCAACATACACTAAAATGGCTAAGGATCCGGACAGTAAGA
CTGACTATGTCAATACTGTCTATGAGAAAATGGGCTATATTGAATATCTAAATCCTAAAGAGTTACAAGAAGCTGCTGTT
GAGGTTGATAGTAGTGTGACTGTAGAACCTACAGATACTAATAAAAAAATATACGAAGAGTATGTCCTCAAGCTAGGAAA
AAACTGGGTACTTCATCAATTTGAGGGAAGCCAGTCTATTTATGCGACTAGAGAAATACCGATTTATGAGCGAGTAATTG
ATTTCTATGGAAATATGTTCGAGTTTGATCATGTCAATAAGGTTCAAGACCCGGAAAATCCTGATTTAGAACGTTACATT
CGCTTTGAAAATGATCCTGCAATTGGTTGGTCACTTGTTGGTTCTGGGACTGAGCATAAGTATCTTCTTTACTTTAACTC
ACAATTTCCATTTATTCATCAAAATTTTGTCAATCTAAACCTAGGTGTATCCTATCCAACATATGCAAATGTTGAAGTAC
TTGACGTTTTAACAAATGGTCAGGGGAAAACAATCTCAACAGATGTGACTTTCCCAACTGGTGAAGTAAAGAAATCGTCT
ATTGATATCTATAGCAGAACCTATAAGTCACCGAGTGTTGCAGATGCCAAGGATAAAGCAAATTTTGGAGATGATCCATA
TACTGCAACAAAGAGTCGATATAAAGATCCATCTATGATAGTCAACTCTTCAATAATTGGGTTAATTAGTGTATTTATAA
CATATATACTTGGTATTCCATTGGGAATACTTATGGCAAGATTTAAAAATAAAGGTTTTGATGTTGTTACAACAGCGATT
TTTAGTTTCCTAATGGCACTTCCTAGTATTGCATTCATTTATATATTCAGATTTGCTTTTGGTCAGATTTTTAATCTACC
TGATACTTTTCCAGTCCTTGGTGCTTCTGATCCGAGGTCATACCTATTTCCTGCTGTTTTATTAGGATTATTAAGTACAC
CTTGGACAGCAATTTGGATACGTCGTTACTTTATTGATTTACAAAATAGTGATTATGTGCGTTTTGCAAGAGCGAAAGGA
TTATCTGAATCTGAAATTTCACGAACACATATTTTTAGAAATGCGATGGTCCCAGTTATTCATAGTGTACCAGCAGCGAT
TGTTGGTGTAATTGTTGGGGCAACATTTACTGAATCAGTATTTGCATTTCCTGGGATGGGTAAAATGTTGATTGATTCAA
TTAACGTTAGCAATAATAACATGGTAGTTGCATTATCATTTATATTTGCAGGTATCAATATTTTTGCGCTATTATTGGGT
GATTTATTAATGACTTTAGTTGATCCACGAATAAAACTTGATGTGAAAGGGGGCAAATGA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

63.928

100

0.639
  amiC Streptococcus thermophilus LMG 18311

63.126

100

0.631
  amiC Streptococcus thermophilus LMD-9

62.725

100

0.627