Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QSV38_RS08130 Genome accession   NZ_CP128410
Coordinates   1554354..1555280 (+) Length   308 a.a.
NCBI ID   WP_289649349.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549354..1560280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS08115 (QSV38_08115) pbp3 1549355..1550596 (-) 1242 WP_289648131.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  QSV38_RS08120 (QSV38_08120) amiA 1550810..1552777 (+) 1968 WP_277837439.1 peptide ABC transporter substrate-binding protein Regulator
  QSV38_RS08125 (QSV38_08125) amiC 1552855..1554354 (+) 1500 WP_274504253.1 ABC transporter permease Regulator
  QSV38_RS08130 (QSV38_08130) amiD 1554354..1555280 (+) 927 WP_289649349.1 oligopeptide ABC transporter permease OppC Regulator
  QSV38_RS08135 (QSV38_08135) amiE 1555290..1556354 (+) 1065 WP_289648135.1 ABC transporter ATP-binding protein Regulator
  QSV38_RS08140 (QSV38_08140) amiF 1556364..1557287 (+) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator
  QSV38_RS08145 (QSV38_08145) thrC 1557499..1558983 (+) 1485 WP_217374203.1 threonine synthase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34639.55 Da        Isoelectric Point: 9.4261

>NTDB_id=847337 QSV38_RS08130 WP_289649349.1 1554354..1555280(+) (amiD) [Streptococcus parasuis strain 7500]
MSTIDKSKFQFVKRDDFASEVIDTPAYSYWNSVFRQFLKKKSTIVMLIILVAIVLMSFIYPIFANYDFNDVSKINDFSAR
YNWPNAEYWFGTDANGQSLFDGVWYGARNSILIALIATVINLVVGVILGGIWGVSKTFDKIMMEIYNVISNIPSLMIFIV
MSYALGAGFWNLILAFCLTGWIGVAFSIRIQIMRYRDLEYNLASRTLGTSTFKLVVKNLLPQLVSVIVTQASQSLPSYIS
MEAFLSYFGIGLPVTTPSLGRLLSKYAQNVTTNAYLFWIPLAALILVSLSLFIVGQNLSDASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=847337 QSV38_RS08130 WP_289649349.1 1554354..1555280(+) (amiD) [Streptococcus parasuis strain 7500]
ATGTCAACAATTGATAAAAGTAAATTTCAATTTGTAAAACGTGATGATTTTGCCTCGGAGGTAATTGATACTCCTGCCTA
CTCATATTGGAATTCTGTATTTCGACAGTTTCTAAAGAAAAAATCTACCATTGTAATGTTAATTATTTTGGTAGCCATCG
TCCTTATGAGTTTTATTTATCCCATTTTTGCAAATTATGATTTCAATGATGTAAGTAAAATTAATGATTTCAGCGCTCGT
TATAATTGGCCAAATGCCGAGTATTGGTTCGGAACTGATGCAAATGGACAGTCTCTATTTGATGGGGTTTGGTATGGAGC
AAGAAATTCAATTTTGATTGCACTTATTGCGACTGTTATTAACCTTGTCGTTGGTGTCATCCTTGGGGGAATCTGGGGTG
TATCAAAGACTTTTGATAAAATAATGATGGAAATTTACAATGTCATATCAAATATTCCATCACTAATGATTTTCATTGTA
ATGTCATATGCTCTTGGAGCTGGCTTCTGGAATTTGATATTAGCATTTTGTTTAACAGGATGGATTGGTGTAGCGTTCTC
AATCCGAATCCAGATTATGAGATATCGCGATTTGGAATATAATTTGGCTAGTCGCACGCTCGGTACTTCAACTTTTAAAT
TAGTAGTAAAAAACCTATTGCCACAATTGGTATCTGTGATAGTAACACAAGCCTCACAAAGTTTACCAAGCTATATTTCA
ATGGAGGCCTTCCTTTCATACTTTGGAATAGGGCTCCCTGTGACAACACCAAGTTTAGGTCGATTGCTTTCTAAGTATGC
TCAAAATGTGACTACCAATGCATACTTATTTTGGATTCCTTTAGCAGCGTTAATCTTAGTTTCGCTATCACTATTCATTG
TTGGACAAAATTTGTCTGATGCAAGTGACCCACGTACACATAGATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.597

100

0.776
  amiD Streptococcus thermophilus LMG 18311

75.974

100

0.76
  amiD Streptococcus thermophilus LMD-9

75.974

100

0.76