Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VM636_RS20435 Genome accession   NZ_CP144555
Coordinates   4653296..4653976 (+) Length   226 a.a.
NCBI ID   WP_030418267.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4648296..4658976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS20410 (VM636_20410) - 4649977..4650171 (+) 195 WP_030418264.1 hypothetical protein -
  VM636_RS20425 (VM636_20425) tig 4650834..4652249 (+) 1416 WP_053912481.1 trigger factor -
  VM636_RS20430 (VM636_20430) - 4652560..4653165 (+) 606 WP_030418266.1 ATP-dependent Clp protease proteolytic subunit -
  VM636_RS20435 (VM636_20435) clpP 4653296..4653976 (+) 681 WP_030418267.1 ATP-dependent Clp protease proteolytic subunit Regulator
  VM636_RS20440 (VM636_20440) clpX 4654157..4655443 (+) 1287 WP_030418268.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  VM636_RS20445 (VM636_20445) - 4655522..4656514 (-) 993 WP_030418269.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25088.47 Da        Isoelectric Point: 4.5790

>NTDB_id=847138 VM636_RS20435 WP_030418267.1 4653296..4653976(+) (clpP) [Streptomyces sp. SCSIO 75703]
MNDFPGSGLYDRARAEYTGPSAESRYIIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=847138 VM636_RS20435 WP_030418267.1 4653296..4653976(+) (clpP) [Streptomyces sp. SCSIO 75703]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCGCGCGTGCCGAGTACACCGGCCCCTCGGCCGAGTCCCGCTACAT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCCCAGCTCCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTCACGGCCATCTACGACACGATGCAGTA
CGTGAAGCCCGACATCCAGACCGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCCGGCACGCCCG
GCAAGCGGATGGCGCTGCCGAACGCCCGCATCCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTGCGCATGCGCGCGCAGCTCGAGGAGATGCTGGCCAAGCACTCGACCACCCCGGT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGAGCTACGGCCTGATCGACCAGA
TCATCACCACCCGGAAGATGGACAACTCCTCCCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.794

83.628

0.425
  clpP Streptococcus mutans UA159

43.902

90.708

0.398
  clpP Streptococcus pyogenes JRS4

44.279

88.938

0.394
  clpP Streptococcus pyogenes MGAS315

44.279

88.938

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.059

89.381

0.394
  clpP Streptococcus thermophilus LMG 18311

45.128

86.283

0.389
  clpP Streptococcus thermophilus LMD-9

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.069

89.381

0.385
  clpP Streptococcus pneumoniae Rx1

43.878

86.726

0.381
  clpP Streptococcus pneumoniae D39

43.878

86.726

0.381
  clpP Streptococcus pneumoniae R6

43.878

86.726

0.381
  clpP Streptococcus pneumoniae TIGR4

43.878

86.726

0.381