Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VZC43_RS16810 Genome accession   NZ_CP144364
Coordinates   3463126..3463749 (-) Length   207 a.a.
NCBI ID   WP_077580482.1    Uniprot ID   -
Organism   Escherichia coli strain H106     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3458126..3468749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZC43_RS16795 (VZC43_16795) hupB 3458703..3458993 (-) 291 WP_254892905.1 nucleoid-associated protein HU-beta -
  VZC43_RS16800 (VZC43_16800) lon 3459184..3461538 (-) 2355 WP_001295325.1 endopeptidase La -
  VZC43_RS16805 (VZC43_16805) clpX 3461726..3463000 (-) 1275 WP_000130305.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  VZC43_RS16810 (VZC43_16810) clpP 3463126..3463749 (-) 624 WP_077580482.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  VZC43_RS16815 (VZC43_16815) tig 3463995..3465293 (-) 1299 WP_001198386.1 trigger factor -
  VZC43_RS16820 (VZC43_16820) bolA 3465637..3465954 (-) 318 WP_000973448.1 transcriptional regulator BolA -
  VZC43_RS16825 (VZC43_16825) yajG 3466259..3466837 (+) 579 WP_001295326.1 lipoprotein -
  VZC43_RS16830 (VZC43_16830) ampG 3466881..3468356 (+) 1476 WP_000098429.1 muropeptide MFS transporter AmpG -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23202.69 Da        Isoelectric Point: 5.6032

>NTDB_id=847073 VZC43_RS16810 WP_077580482.1 3463126..3463749(-) (clpP) [Escherichia coli strain H106]
MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSP
GGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
GRMNELMALHTGQSLEQIERDTERDRFLSALEAVEYGLVDSILTHRN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=847073 VZC43_RS16810 WP_077580482.1 3463126..3463749(-) (clpP) [Escherichia coli strain H106]
ATGTCATACAGCGGCGAACGAGATAACTTTGCACCCCATATGGCGCTGGTGCCGATGGTCATTGAACAGACCTCACGCGG
TGAGCGCTCTTTTGATATCTATTCTCGTCTACTTAAGGAACGCGTCATTTTTCTGACTGGCCAGGTTGAAGACCACATGG
CTAACCTGATTGTGGCGCAGATGCTGTTCCTGGAAGCGGAAAACCCAGAAAAAGATATCTATCTGTACATTAACTCCCCA
GGCGGGGTGATCACTGCCGGGATGTCTATCTATGACACCATGCAGTTTATCAAGCCTGATGTCAGCACCATCTGTATGGG
CCAGGCGGCCTCGATGGGCGCTTTCTTGCTGACCGCAGGGGCAAAAGGTAAACGTTTTTGCCTGCCGAATTCGCGCGTGA
TGATTCACCAACCGTTGGGCGGCTACCAGGGCCAGGCGACCGATATCGAAATTCATGCCCGTGAAATTCTGAAAGTTAAA
GGGCGCATGAATGAACTTATGGCGCTTCATACGGGTCAATCATTAGAACAGATTGAACGTGATACCGAGCGCGATCGCTT
CCTTTCCGCCCTTGAAGCGGTGGAATACGGTCTGGTCGATTCGATTCTGACCCATCGTAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.792

92.754

0.647
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.617

90.821

0.623
  clpP Lactococcus lactis subsp. cremoris KW2

56.701

93.72

0.531
  clpP Streptococcus pneumoniae R6

55.155

93.72

0.517
  clpP Streptococcus pneumoniae TIGR4

55.155

93.72

0.517
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

93.72

0.517
  clpP Streptococcus pneumoniae Rx1

55.155

93.72

0.517
  clpP Streptococcus pneumoniae D39

55.155

93.72

0.517
  clpP Streptococcus thermophilus LMD-9

54.922

93.237

0.512
  clpP Streptococcus thermophilus LMG 18311

54.922

93.237

0.512
  clpP Streptococcus pyogenes JRS4

55.263

91.787

0.507
  clpP Streptococcus pyogenes MGAS315

55.263

91.787

0.507
  clpP Streptococcus mutans UA159

53.886

93.237

0.502