Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QSJ13_RS11390 Genome accession   NZ_CP128372
Coordinates   2369416..2370057 (-) Length   213 a.a.
NCBI ID   WP_031958555.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH2146     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2364416..2375057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ13_RS11370 (QSJ13_11385) aroK 2365332..2365901 (-) 570 WP_000643712.1 shikimate kinase AroK -
  QSJ13_RS11375 (QSJ13_11390) pilQ 2365913..2368078 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  QSJ13_RS11380 (QSJ13_11395) pilP 2368141..2368668 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QSJ13_RS11385 (QSJ13_11400) pilO 2368679..2369419 (-) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSJ13_RS11390 (QSJ13_11405) pilN 2369416..2370057 (-) 642 WP_031958555.1 PilN domain-containing protein Machinery gene
  QSJ13_RS11395 (QSJ13_11410) pilM 2370057..2371115 (-) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  QSJ13_RS11400 (QSJ13_11415) ponA 2371276..2373831 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  QSJ13_RS11405 (QSJ13_11420) - 2373849..2374673 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  QSJ13_RS11410 (QSJ13_11425) - 2374676..2375008 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24047.41 Da        Isoelectric Point: 5.4028

>NTDB_id=847073 QSJ13_RS11390 WP_031958555.1 2369416..2370057(-) (pilN) [Acinetobacter baumannii strain XH2146]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLAEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=847073 QSJ13_RS11390 WP_031958555.1 2369416..2370057(-) (pilN) [Acinetobacter baumannii strain XH2146]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGCGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704